Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b13
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    49   6e-07
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   1.9  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   4.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.8  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   7.8  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
 Frame = +1

Query: 385 LHPLVIMNVSEHWTRLKAQEGFPQTVVGALIGKQKGRNIEVMNSFELVFSMXXXXXXXXX 564
           +HPLV+++  + + R  + +G  + VVG L+G+  G  + V NS+ + F           
Sbjct: 19  VHPLVLLSAVDSYNR--SAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76

Query: 565 XYYNMKE---EQFKQVFSDMDFLGWYTTGDAPSERDIAVH 675
             +N  E   E FK++ ++   +GWY TG      D+ ++
Sbjct: 77  LDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEIN 116


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 412 SEHWTRLKAQEGFPQTVVGALIGKQKGRNIEVMNSFE 522
           +EH  ++ A  G P T VGA++G Q       MN+FE
Sbjct: 73  AEHIDKVVALYG-PATKVGAIVGGQTSCKAPEMNAFE 108


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 261 YFHFHFEINSIST*HFNSGIRELNELKLEDYIMRNKYLYCL 139
           YF  H+  N +S   F+ G    +  KL    +RN+Y+Y L
Sbjct: 393 YFVPHYIQNRMSQSFFSVGYIAKSTFKLNPLRLRNQYIYFL 433


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 247  MEVEVESASSGPPIEVPNPTSPAPTTPGSN 336
            +E +    S  PP+    PTSP P  P S+
Sbjct: 1344 LENQFSKMSLEPPVRPAVPTSPKPQIPDSS 1373


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 223 SADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTP 327
           ++ + DFE++ +   + SG P    N T+P  +TP
Sbjct: 57  ASHKYDFEIDRDSLKSDSGSPRLHQNATAPTSSTP 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,795
Number of Sequences: 5004
Number of extensions: 47978
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)