Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11b13
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 88 7e-18
12_02_1159 + 26585042-26585441,26585520-26585608,26585670-265857... 37 0.018
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 36 0.031
10_08_0517 + 18482902-18482986,18483074-18483291,18483888-184840... 30 1.5
10_08_0518 + 18486315-18486462,18486495-18486712,18486763-184868... 29 2.7
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 29 2.7
02_05_0814 - 31970558-31971126,31971242-31971413 29 2.7
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 29 3.5
01_01_0710 + 5492389-5492745,5493664-5493948,5494121-5494438,549... 29 4.7
11_01_0599 - 4777964-4778842 28 6.2
10_08_0515 - 18473545-18473791,18473921-18474156,18474299-184744... 28 6.2
03_06_0541 - 34607071-34607353,34608167-34608399,34609093-346092... 28 6.2
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578... 28 8.1
06_01_0882 + 6759378-6759707,6759837-6760488,6760609-6760673,676... 28 8.1
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 87.8 bits (208), Expect = 7e-18
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 13/117 (11%)
Frame = +1
Query: 385 LHPLVIMNVSEHWTRLKAQE-------------GFPQTVVGALIGKQKGRNIEVMNSFEL 525
LHPLVI+NVS+H TR+KAQ G P V G +IG Q+GR +E+ NSFEL
Sbjct: 31 LHPLVIVNVSDHHTRVKAQAACSGDGASSAAAGGQPPRVFGCVIGVQRGRTVEIFNSFEL 90
Query: 526 VFSMXXXXXXXXXXYYNMKEEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICDIN 696
V + + K+E +K+VF D LGWY+TG + D+ +H+ + DIN
Sbjct: 91 V--LDPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHKALMDIN 145
>12_02_1159 +
26585042-26585441,26585520-26585608,26585670-26585720,
26586189-26586282,26586451-26586512,26586589-26586671,
26586793-26586901,26587010-26587051,26587152-26587316,
26588165-26588341,26588820-26588984,26589069-26589332
Length = 566
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +1
Query: 451 PQTVVGALIGKQKGRNIEVMNSFELVFSMXXXXXXXXXXYYNMKEEQFKQVFSDMDFLGW 630
P + G +IG Q+GR +EV+++ +++ + K E +K+ F + LGW
Sbjct: 89 PPRMYGCVIGVQRGRTVEVVDTSDIL--LDTDPGTLDRDLLKKKLETYKKAFPGLAILGW 146
Query: 631 YTTGDAPSERDIAVHR 678
Y+ + D+ ++
Sbjct: 147 YSIDTHVTNTDMETNQ 162
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 385 LHPLVIMNVSEHWTRLKAQEGFPQTVVGALIGKQKGRNIEVMNSFELVFSMXXXXXXXXX 564
+HPLV++++ +H+ R+ + VVG L+G +++V NS+ + F
Sbjct: 19 VHPLVLLSIVDHYNRVARDTR--KRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 565 XYYNMKEEQF 594
+N E F
Sbjct: 77 LDHNYHESMF 86
>10_08_0517 +
18482902-18482986,18483074-18483291,18483888-18484049,
18484132-18484367,18484455-18484710
Length = 318
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 582 RGTIQTSVF*HGFPRMVYNWR 644
+G + T VF HGFP + Y+WR
Sbjct: 28 KGELGTVVFLHGFPEIWYSWR 48
>10_08_0518 +
18486315-18486462,18486495-18486712,18486763-18486808,
18487436-18487709,18487797-18488052
Length = 313
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 585 GTIQTSVF*HGFPRMVYNWR 644
G + T VF HGFP + Y+WR
Sbjct: 50 GELGTVVFLHGFPEIWYSWR 69
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 205 PRVKMSSADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPG 330
PRV + R +EME ++ + GP + P +P PT G
Sbjct: 163 PRV-VRPIKRTSYEMEPQIRRPAQGPGFYMQRPPTPPPTPRG 203
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 265 SASSGPPIEVPNPTSPAPTTP 327
S+ S P PNP++P PTTP
Sbjct: 145 SSPSSPTPTTPNPSTPTPTTP 165
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 205 PRVKMSSADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSN 336
P + ++A + E+ E+ S P + PN +PAPT N
Sbjct: 2921 PSCQRNAAFDSENEVSAEINLTGSQAPCDAPNKATPAPTEDDHN 2964
>01_01_0710 +
5492389-5492745,5493664-5493948,5494121-5494438,
5494900-5495127,5495884-5495984,5496493-5496604,
5496654-5496662,5496897-5497340,5497649-5497909
Length = 704
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 262 ESASSGPPIEVPNPTSPAPTTPGSNK 339
E ++SG PIE P PT PA ++ S +
Sbjct: 490 EDSASGFPIEPPRPTHPAESSQDSQR 515
>11_01_0599 - 4777964-4778842
Length = 292
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 217 MSSADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSN 336
+SS D ++ E EVE ++A + P+ P+SP + P N
Sbjct: 67 VSSPDAMEAEPEVEEDAAPAVVPMMYSAPSSPQSSPPPPN 106
>10_08_0515 -
18473545-18473791,18473921-18474156,18474299-18474460,
18474731-18474948,18475048-18475120
Length = 311
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 582 RGTIQTSVF*HGFPRMVYNWR 644
+G T +F HGFP + Y+WR
Sbjct: 24 KGEAATLLFVHGFPEVWYSWR 44
>03_06_0541 -
34607071-34607353,34608167-34608399,34609093-34609275,
34609357-34609659
Length = 333
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 585 GTIQTSVF*HGFPRMVYNWR 644
GT +F HGFP + Y+WR
Sbjct: 29 GTAPAVLFVHGFPELWYSWR 48
>11_04_0331 +
16456577-16456579,16456664-16456911,16457625-16457812,
16458293-16458489,16458579-16458768,16458865-16459084,
16459169-16459376,16459508-16459642,16459725-16459916,
16459999-16460171,16460266-16460454,16460539-16460655,
16460734-16460818,16460900-16461052,16461135-16461260,
16461391-16461573,16461823-16461984,16462098-16462214
Length = 961
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 109 QFNIYDLTIIFSSLHFGDN 53
++ IYDL FSS HF DN
Sbjct: 926 EYEIYDLRPFFSSAHFRDN 944
>06_01_0882 +
6759378-6759707,6759837-6760488,6760609-6760673,
6761363-6761440,6761523-6761633,6761739-6761783,
6762200-6762373,6762841-6763797
Length = 803
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 280 PPIEVPNPTSPAPTTPGSN 336
P +P+ T+PAP PGSN
Sbjct: 207 PEFVIPDATAPAPPPPGSN 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,555
Number of Sequences: 37544
Number of extensions: 291852
Number of successful extensions: 1078
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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