Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b13
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    64   1e-10
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    50   2e-06
U00055-2|AAA50721.1|  223|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      27   9.7  

>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
 Frame = +1

Query: 385 LHPLVIMNVSEHWTRLKAQEG-FPQTVVGALIGKQKGRNIEVMNSFELVFSMXXXXXXXX 561
           LHPLVIM +SEH++R K Q+G   + V GA++G+Q GR +E +NSF L            
Sbjct: 16  LHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEMAEPVT 75

Query: 562 XXYYNM--KEEQFKQVFSDMDFLGWYTTGD 645
               ++  + +Q+ +VF ++  +G Y  G+
Sbjct: 76  FSTEHLLQRADQYLEVFPELQVIGLYCAGE 105


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
 Frame = +1

Query: 385 LHPLVIMNVSEHWTRLKAQEGFPQTVVGALIGK-QKGRNIEVMNSFELVFS---MXXXXX 552
           +HPLV+++V +H+ R+   +   + VVG L+G  +K + +++ NSF + F          
Sbjct: 43  VHPLVLLSVVDHFNRVSKTQSVKR-VVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTW 101

Query: 553 XXXXXYYNMKEEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQI 684
                Y       F +V +    +GWY TG    + DIA++ Q+
Sbjct: 102 FLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQL 145


>U00055-2|AAA50721.1|  223|Caenorhabditis elegans Hypothetical
           protein R02F2.5 protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 229 DRIDFEMEVEVESASSGPPIEVPNPTSPAP 318
           D+ + E+E EVE   S P   VP PT PAP
Sbjct: 102 DQTEKEVEKEVEKRKSAPRAPVPAPT-PAP 130


>U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical
           protein T12E12.1 protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 312 GAYNTRQQ*ECSSYDCYSRFGDRLSPSFSYYECFR 416
           G  N  Q   C  + C+  FGD  S    YYEC R
Sbjct: 298 GGCNHIQCTRCRHHFCWMCFGDWKSHGSEYYECSR 332


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 256 EVESASSGPPIEVPNPTSPAPTTP 327
           E   A   P  EVPNP  P+P +P
Sbjct: 569 ETTDAPEEPATEVPNPQPPSPPSP 592


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 280 PPIEVPNPTSPAPTTPG 330
           PP   P PT+PAP+ PG
Sbjct: 59  PPPATPPPTTPAPSCPG 75


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 223  SADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSN 336
            S D I  ++   +  +   PP   PNP SP    P SN
Sbjct: 1698 SFDNISSKLRSSLAISKLAPPPRPPNPISPINRGPSSN 1735


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 223  SADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSN 336
            S D I  ++   +  +   PP   PNP SP    P SN
Sbjct: 1698 SFDNISSKLRSSLAISKLAPPPRPPNPISPINRGPSSN 1735


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 223  SADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSN 336
            S D I  ++   +  +   PP   PNP SP    P SN
Sbjct: 1698 SFDNISSKLRSSLAISKLAPPPRPPNPISPINRGPSSN 1735


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,527,952
Number of Sequences: 27780
Number of extensions: 282063
Number of successful extensions: 934
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)