Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b12
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0164 + 1863890-1866253                                           28   6.2  
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626...    28   8.1  

>10_01_0164 + 1863890-1866253
          Length = 787

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 338 CYTRLSENHVATWSPFHWELNDVNYLRR*P 427
           C   L + H ATW  F W+ +DV  ++  P
Sbjct: 279 CKGSLVKKHPATWLEFEWKQHDVQQIQPWP 308


>10_08_0683 -
           19860777-19861070,19861677-19861874,19862498-19862659,
           19862763-19862911,19863089-19863236,19863317-19863385,
           19863471-19863719,19863937-19864131,19864444-19864560,
           19864978-19866537
          Length = 1046

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +2

Query: 305 RFPDFFSGN*RCYTRLSENHVATWSPFHWELNDVNYLRR*PREPLSKDRLNL 460
           R PDF S N   Y   S+N   TW    +   D N  +  P++P    R NL
Sbjct: 683 RIPDFISINDAIY--FSDNDPETWHVQVFRSIDSNSAKGFPKDPREATRKNL 732


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,247,227
Number of Sequences: 37544
Number of extensions: 455024
Number of successful extensions: 995
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)