Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b12
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 577 CRTWLESFPTPPQKSRFLS 633
           CR+WL  FPT  ++   +S
Sbjct: 401 CRSWLSKFPTRSKRIDVIS 419


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 577 CRTWLESFPTPPQKSRFLS 633
           CR+WL  FPT  ++   +S
Sbjct: 401 CRSWLSKFPTRSKRIDVIS 419


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +1

Query: 589 LESFPTPPQKSRFLSLGVT---QLQTFLPIRVES 681
           L  F  PP     L+LGVT    L  FL +  ES
Sbjct: 213 LLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAES 246


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +1

Query: 589 LESFPTPPQKSRFLSLGVT---QLQTFLPIRVES 681
           L  F  PP     L+LGVT    L  FL +  ES
Sbjct: 213 LLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAES 246


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +1

Query: 589 LESFPTPPQKSRFLSLGVT---QLQTFLPIRVES 681
           L  F  PP     L+LGVT    L  FL +  ES
Sbjct: 213 LLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAES 246


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +1

Query: 589 LESFPTPPQKSRFLSLGVT---QLQTFLPIRVES 681
           L  F  PP     L+LGVT    L  FL +  ES
Sbjct: 281 LLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAES 314


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 598 FPTPPQKSRFLSLGVTQL 651
           F  PP     LSLGVT L
Sbjct: 253 FTLPPDSGEKLSLGVTIL 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,041
Number of Sequences: 438
Number of extensions: 5384
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)