Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b05
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0619 - 4961588-4962409                                           50   1e-06
09_01_0032 - 541411-541737,542751-543752                               29   3.8  
05_07_0219 - 28474661-28475146,28475979-28476644                       29   3.8  
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315...    29   5.0  
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139...    28   8.8  

>11_01_0619 - 4961588-4962409
          Length = 273

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/39 (53%), Positives = 29/39 (74%)
 Frame = +2

Query: 218 RCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKE 334
           +CQKC + GHW+YECK +R  + RPSRT+ + KN K K+
Sbjct: 95  QCQKCFQPGHWTYECKNERVYISRPSRTQQL-KNPKLKK 132


>09_01_0032 - 541411-541737,542751-543752
          Length = 442

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 218 RCQKCLEFGHWSYECKGKRK 277
           RC+ CL++GH + +CK  ++
Sbjct: 403 RCEDCLQYGHRTRDCKNNKE 422


>05_07_0219 - 28474661-28475146,28475979-28476644
          Length = 383

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 215 IRCQKCLEFGHWSYECKGKRKI 280
           I C++C +FGH++ EC   RK+
Sbjct: 343 IECRRCGKFGHFADECDEPRKM 364


>01_01_0419 -
           3146851-3147339,3148428-3148663,3148847-3149793,
           3150258-3150356,3151128-3151501
          Length = 714

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 215 IRCQKCLEFGHWSYECKGKRKI 280
           I C +C +FGH++ EC   RK+
Sbjct: 674 IECHRCGKFGHFADECDEPRKM 695


>06_03_1516 +
           30712208-30712780,30712984-30713139,30713819-30713985,
           30714108-30714357,30714400-30715182,30715437-30715753,
           30715775-30716036
          Length = 835

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 209 QGIRCQKCLEFGHWSYECKGKRKILV-RPSR 298
           QG+RC  C +  H +  C  K+K  V RP +
Sbjct: 298 QGVRCASCHKLDHRALACWNKKKAQVWRPKK 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,052,602
Number of Sequences: 37544
Number of extensions: 249709
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)