Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b05
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    33   0.28 
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    33   0.28 
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 221 CQKCLEFGHWSYECKGKRKIL 283
           C++C E GHW YEC  + K L
Sbjct: 667 CRRCAEEGHWGYECPTRPKDL 687


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 221 CQKCLEFGHWSYECKGKRKIL 283
           C++C E GHW YEC  + K L
Sbjct: 667 CRRCAEEGHWGYECPTRPKDL 687


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 587 PLALKR-ISTLTFS-CLNRCQIQNHCCSLNQTRSPIHCCCHYQTS-SNPPMTNQ 435
           PL L   I+TLT   C + C+  + CC  + T S  H C    T   N P++N+
Sbjct: 229 PLPLNTSITTLTRCFCDSECERGSKCCPGSITNSNYHACLPALTKIMNEPISNE 282


>Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical
           protein F11A10.8 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 215 IRCQKCLEFGHWSYEC-KGKRKILVRPSRTRIMHKNLKAKEEGQCSN 352
           + C KC E GH++  C KG    L   +      +    KE+G+ +N
Sbjct: 250 VTCYKCGEKGHYANRCHKGALAFLSNTAHLAHEQREKDEKEQGRINN 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,752,042
Number of Sequences: 27780
Number of extensions: 243927
Number of successful extensions: 782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)