Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b03
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    99   3e-22
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    27   2.1  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   8.4  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.4  

>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score =   99 bits (238), Expect = 3e-22
 Identities = 45/79 (56%), Positives = 57/79 (72%)
 Frame = +1

Query: 478 TVQSWIEYLSGETWNPMKLKYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPLTDN 657
           +V SWI+ +SGETWN MK+ YQL+ VRERLAK LV+KG+L  EK+NFLLFDM THP+ D 
Sbjct: 148 SVTSWIDLMSGETWNVMKIGYQLRQVRERLAKGLVDKGILRNEKKNFLLFDMPTHPIADT 207

Query: 658 VVKCRLVKKVQEAALRRSI 714
            +K  + K+V      R I
Sbjct: 208 SIKDSIKKRVVSVLTSRVI 226



 Score = 30.3 bits (65), Expect = 0.30
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 267 DKEGYTSFWNDCIS 308
           DK+GY SFWND IS
Sbjct: 73  DKQGYLSFWNDSIS 86


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 475 LEGQYLSYVSVYAIYWSTDFT 413
           LEG Y S    Y  YW+TDFT
Sbjct: 90  LEGSYGSDGEAYHGYWNTDFT 110


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 574 F*PIFRVRSLTGISVSLDSMFHH 506
           F  IF    +TGI +++DS+F+H
Sbjct: 216 FKAIFVALLITGICITVDSLFYH 238


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 535 SVSLDSMFHHSDIQSSFVLFLEGQY-LSYVSVYAIY 431
           SVSL+ +F H  ++S   LF++ ++  +Y+ +  +Y
Sbjct: 111 SVSLEDIFTHGTVESVIPLFMKKRHPEAYLRIKLVY 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,096
Number of Sequences: 5004
Number of extensions: 46477
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)