Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b03
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    37   0.019
10_06_0042 - 10015657-10017840                                         29   3.8  

>03_01_0458 -
           3521938-3522024,3522133-3522213,3522673-3522806,
           3523189-3523270,3523420-3523692,3523953-3524162,
           3524252-3524337,3525197-3525289,3526003-3526227,
           3526320-3526930,3529328-3529395,3529491-3529679,
           3529773-3529901,3530013-3532484
          Length = 1579

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 454 MKDTDPPETVQSWIEYLSGETWNPMKLKYQLKNVRERLAKNL 579
           + D  P E   +W E L+G TW P+     LK + E LA N+
Sbjct: 413 LNDVVPEEIDDAWAEKLTGSTWRPVDATAALKILEEELADNV 454


>10_06_0042 - 10015657-10017840
          Length = 727

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 508 HSDIQSSFVLFLEGQYLSYVSVYAIYWSTDFTITFLDNKPFL 383
           H D   ++VL L G  +  V+ Y +  S+D T+ FLD KP L
Sbjct: 324 HVDRGVTYVLLLGGVAID-VAGYLMLLSSDRTLAFLDGKPKL 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,175
Number of Sequences: 37544
Number of extensions: 251215
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)