Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b03
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-13|AAF60665.1|  301|Caenorhabditis elegans Hypothetical...   153   2e-37
U49944-4|AAA93419.1|  457|Caenorhabditis elegans Neuropeptide re...    28   5.9  
Z68270-4|CAE46687.1|  755|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z68270-3|CAA92568.1|  769|Caenorhabditis elegans Hypothetical pr...    28   7.8  
EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folat...    28   7.8  
AF047653-1|AAC04458.2|  272|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AC024791-13|AAF60665.1|  301|Caenorhabditis elegans Hypothetical
           protein Y47G6A.18 protein.
          Length = 301

 Score =  153 bits (370), Expect = 2e-37
 Identities = 68/92 (73%), Positives = 82/92 (89%)
 Frame = +1

Query: 448 KHMKDTDPPETVQSWIEYLSGETWNPMKLKYQLKNVRERLAKNLVEKGVLTTEKQNFLLF 627
           +HMK+T+PPETV SWIEYLSGETWNP+KL+YQL+NVRERLAKNLVEKGVLTT+KQNFLLF
Sbjct: 121 RHMKETNPPETVTSWIEYLSGETWNPLKLRYQLRNVRERLAKNLVEKGVLTTDKQNFLLF 180

Query: 628 DMTTHPLTDNVVKCRLVKKVQEAALRRSITDV 723
           ++TTHPL+D   K +L+K+VQEA L +   DV
Sbjct: 181 EITTHPLSDGNQKTKLIKEVQEAVLGKWTNDV 212



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 23/52 (44%), Positives = 25/52 (48%)
 Frame = +3

Query: 267 DKEGYTSFWNDCISSXXXXXXXXXXXXXXXXXXXXXXXXXKGLLSRKVIVKS 422
           D+EGYTSFWNDCISS                         K LL+RKV VKS
Sbjct: 56  DREGYTSFWNDCISSGLRGCVLIELVLRGRIQLEGGGMRRKNLLNRKVTVKS 107


>U49944-4|AAA93419.1|  457|Caenorhabditis elegans Neuropeptide
           receptor family protein1 protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -3

Query: 683 FLTKRHLTTLSVRGCVVMSNKRKFCFS-VVKTPFSTRFLANLSRTFFNWYFSFIGFHVSP 507
           ++T  H   LSV+   +++     C   ++  P +      ++  + NWYF  +  H+ P
Sbjct: 49  YVTCSHKALLSVQNIFILNLAASDCMMCILSLPITP-----ITNVYKNWYFGNLLCHLIP 103

Query: 506 L--RYSIQLCTVSGGSVS 459
                SI +CT S G+++
Sbjct: 104 CIQGISIFVCTFSLGAIA 121


>Z68270-4|CAE46687.1|  755|Caenorhabditis elegans Hypothetical
           protein ZC410.4b protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 468 PSRNSTKLD*ISEW*NMESNETEIPVKERTRKIG 569
           PSRNS +   +S+W ++E +ET  P +E   +IG
Sbjct: 679 PSRNSVEHPVMSDWKDVEESET-APDEEEEEEIG 711


>Z68270-3|CAA92568.1|  769|Caenorhabditis elegans Hypothetical
           protein ZC410.4a protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 468 PSRNSTKLD*ISEW*NMESNETEIPVKERTRKIG 569
           PSRNS +   +S+W ++E +ET  P +E   +IG
Sbjct: 679 PSRNSVEHPVMSDWKDVEESET-APDEEEEEEIG 711


>EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folate
           carrier protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 532 VSLDSMFHHSDIQSSFVLFLEGQYLSYVSVYAIYW 428
           V +DS F H DI++ FV++  G +    S++A ++
Sbjct: 343 VVVDSRFLHLDIRTQFVIY-SGYFALVASIFAFFF 376


>AF047653-1|AAC04458.2|  272|Caenorhabditis elegans Hypothetical
           protein W02F12.2 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/62 (20%), Positives = 21/62 (33%)
 Frame = +1

Query: 478 TVQSWIEYLSGETWNPMKLKYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPLTDN 657
           ++  W EY SG  W     KYQ        A       ++     N +L     H +   
Sbjct: 5   SINRWFEYESGHAWCESAYKYQTLPYVAEFANTCTNLPIIVLPLVNIMLLRRYLHDVNGG 64

Query: 658 VV 663
           ++
Sbjct: 65  LI 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,743,449
Number of Sequences: 27780
Number of extensions: 251300
Number of successful extensions: 603
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)