Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b02
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    31   0.18 
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    30   0.40 
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    29   0.54 
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    29   0.94 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    28   1.6  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   2.2  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    27   2.9  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   3.8  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    27   3.8  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   5.0  
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    26   5.0  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   5.0  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   5.0  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.7  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 205 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 315
           ++  +L+C  C ++ EI N  M+P+++L ++ +L L+
Sbjct: 240 LQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 276


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +1

Query: 481 NKINDNFDAASLASVLFEKSLLDDAEDSNNAAN---SDDTMLSESQAILKKLQIDIAEQT 651
           N + D F++ + A  L +KSL   A +   A N   S +  LS +Q  + ++Q    +  
Sbjct: 270 NALEDKFNSEA-ARQLLQKSLSIVASNLKQAENKTISYEEKLSIAQNSINEIQTQNRDLK 328

Query: 652 QLNIKRQLDLNXLQQTSVFMQEKLDRIKND 741
               K Q  +  L + +  +QE L+ +KND
Sbjct: 329 LETEKLQDQIKALLERNQSLQEALETVKND 358


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 397 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLL 546
           + +H N YS+ R +V+      TSV  W+K     D+  + + ++ K LL
Sbjct: 619 DGVHSNGYSLVRKIVEYSDLEYTSVCPWDKNVRLGDSLLIPTRIYVKPLL 668


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = +1

Query: 391 RVESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNN 570
           RV   HF   ++ R+V  ++K S     +W ++    +   L     ++  LD+  + +N
Sbjct: 282 RVHGFHFCTLNLERSVALILKNSGLLTKRWKQVESEMEDEKLLRTTRKRLSLDEPAELHN 341


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
            Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +1

Query: 493  DNFDAASL----ASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLN 660
            D F+ AS     ASV  E+S ++ A   NNAA S + + S  +++  + + ++AE  Q  
Sbjct: 833  DEFNGASETVDGASVEAERSAMEAAA-LNNAAESTEVVGSSPESVASEQEENVAESAQAR 891

Query: 661  IK 666
            ++
Sbjct: 892  VE 893


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 565 NNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNXLQQTSVFM 711
           NN  + D+T+ +E+    KK +   A    L   ++L LN   +TS+F+
Sbjct: 524 NNVPSGDNTLSTEALQDKKKSEELTAHSKILQAAKKLRLNSTLRTSIFV 572


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 397 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKIN 492
           + LH N+YS+ R ++ V+  SV     W  +N
Sbjct: 78  KDLHPNIYSLLRLLIAVLAVSVVFFTAWGCVN 109


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -2

Query: 524 TLAKEAASKLSFILF--HCATLVTL-HLITSTTFRFML*TLKC-KLSTLHRGHGIFFRFL 357
           +++++ AS+L + LF  H A L++L +L    T   ML   +  +   LHRGH   + F 
Sbjct: 281 SISQQKASELMYKLFSEHIAFLLSLKNLPEEATLDCMLSICQVFENDNLHRGHSDEYTFA 340

Query: 356 ILRMHIE 336
           +L   +E
Sbjct: 341 MLEQLLE 347


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 24/103 (23%), Positives = 41/103 (39%)
 Frame = +1

Query: 436 VVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAI 615
           VVDV+K    S A   +  D           FE    D  + S  + N  D   +++   
Sbjct: 43  VVDVLKVKSESSADELEERDAHLDRFRRDSTFESETSDHEDFSGGSENELDEETTKNANS 102

Query: 616 LKKLQIDIAEQTQLNIKRQLDLNXLQQTSVFMQEKLDRIKNDY 744
           +KK+ ++  E+ +  IKR   +   +        KL +I + Y
Sbjct: 103 IKKISLEEVEKQRKAIKRSGVIYLSRIPPYMAPNKLRQILSQY 145


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 208 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 315
           E +KL+ ++ +SV    +YF++P  R  ++P++  D
Sbjct: 613 ELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILAD 648


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +1

Query: 511 SLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDL 681
           SL S    +S  D  E++  A+ S D  L   Q   +KL +D  +++   +KRQ+DL
Sbjct: 2   SLVSYPRSESESDIEEETPLASKSFDPTLF--QHARRKLSVDSTKKSPKRLKRQVDL 56


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 205 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSM 342
           +E++K +  +   +AE    F+Q +  +T I    L  C  +L S+
Sbjct: 336 VEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKPLRFCAERLTSL 381


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 577 NSDDTMLSESQAILKKLQIDIAEQTQLNIKR-QLDLNXLQQTSVFMQEKLDRIKNDYQ 747
           N   + L+  +  L  L  DI    + NIK    D+N LQQ    +  K  ++K++ Q
Sbjct: 397 NRSKSKLAPVRRYLSGLVGDILNICEYNIKLIDFDINHLQQRLTDLSPKFRKVKHEQQ 454


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +1

Query: 307 ELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESL 405
           +L  CKH     C           CPLCR   +
Sbjct: 781 KLQACKHFFHQACIDQWLTTGNNSCPLCRAHGV 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,342
Number of Sequences: 5004
Number of extensions: 47333
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)