Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11b02
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632...    32   0.56 
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829...    30   2.3  
10_01_0199 + 2164555-2165775                                           29   5.2  
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    29   5.2  
12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379     28   6.9  
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565...    28   6.9  
01_01_0552 - 4065623-4065698,4066133-4066218                           28   6.9  

>07_03_1576 -
           27862043-27862129,27862935-27862988,27863042-27863243,
           27865015-27865249,27865338-27865404,27865489-27865639,
           27866898-27866957,27867402-27867466
          Length = 306

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +1

Query: 310 LDTCKHQLCSMCXXXXXXXXXXPCPLCR-----VESLHFNVYSINRNVVDV 447
           L TC H +C  C           CP CR     V S    +Y+ NR++VD+
Sbjct: 178 LPTCSHAMCIKCYRDWRSRSQS-CPFCRDSLKRVNSADLWIYTDNRDIVDI 227


>03_06_0331 -
           33181757-33181795,33182325-33182453,33182941-33182967,
           33183459-33183545,33183827-33183975,33185467-33185521,
           33185596-33187584,33188705-33188782
          Length = 850

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +1

Query: 496 NFDAASLASVLFEKSL-LDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQ 672
           + +A +  +V F +   L + +D  N+   D  + +++ A + + + D++    L  K  
Sbjct: 30  SLEALAKGAVCFSRKFTLKEIQDRWNSLLYDPEISTQASARMVEYENDLSTSNPLKAKV- 88

Query: 673 LDLNXLQQTSVFMQEKLDRIKNDY 744
             +N  Q+   F + K+D +KN Y
Sbjct: 89  --INAKQKDLSFQKRKIDSVKNQY 110


>10_01_0199 + 2164555-2165775
          Length = 406

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -1

Query: 108 FALDIKSFRKKLFSELIIWYPKNSGTYVGYSSYP 7
           F+LD+K+FR +    + I+  +NS T + Y+S+P
Sbjct: 366 FSLDLKTFRLERLCPMTIYQARNSPTEL-YTSFP 398


>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 235 CFSVAEIKNYFMQPIDRLTIIPVLELDTCK 324
           CFS     N++M+PI+ LT++  +++DT +
Sbjct: 237 CFSTEGTANFYMRPIEGLTVL--VDMDTAE 264


>12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379
          Length = 881

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +1

Query: 478 WNKINDNFDAASLASVL----FEKSLLDDAEDSNNAANSDD 588
           +NKI D FD ++  SV      +K L D  +D  +  NSDD
Sbjct: 211 YNKIKDQFDCSAFISVSQSPNIKKILFDMLKDVTSRDNSDD 251


>03_05_0754 +
           27452203-27452242,27452360-27455611,27456480-27456533,
           27456774-27456872,27456948-27457012,27457476-27457575,
           27458326-27458408,27458494-27458569,27458920-27459698
          Length = 1515

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 514 LASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQ-LNIKRQLDLNXL 690
           +A+   EKSL ++ E    A N  ++ LSE    L++ +I + +Q Q L    +L +N  
Sbjct: 625 IATTEIEKSLREEKEKLLGALNEANSALSEKNCELRQSEIILHQQKQALEHLEELRVNME 684

Query: 691 QQTSVFMQE 717
            +   ++ E
Sbjct: 685 TEIKGYIDE 693


>01_01_0552 - 4065623-4065698,4066133-4066218
          Length = 53

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 719 FSCIKTLVCCNXFKSNCRLMLSCVC 645
           ++C+ TL CC      C   L C+C
Sbjct: 27  YACLFTLCCCFCCYETCECCLECLC 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,270,802
Number of Sequences: 37544
Number of extensions: 278684
Number of successful extensions: 786
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)