Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11b02
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 35 0.054
AC024849-1|AAK68546.2| 374|Caenorhabditis elegans Hypothetical ... 35 0.054
U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical pr... 34 0.094
AF016666-6|AAB66086.1| 292|Caenorhabditis elegans Hypothetical ... 34 0.094
U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical pr... 33 0.22
AF099919-6|AAC68803.1| 261|Caenorhabditis elegans Hypothetical ... 30 1.5
Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical p... 30 2.0
AF016666-4|AAB66082.1| 331|Caenorhabditis elegans Hypothetical ... 29 2.7
AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 29 4.7
AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical ... 29 4.7
Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical pr... 28 6.2
U97011-1|AAB52324.1| 174|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 28 8.1
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 28 8.1
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 28 8.1
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 28 8.1
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 28 8.1
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 28 8.1
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/84 (21%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 469 VAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQ 648
+ Q ++++ NF L + + + L+DD ++ A + + + +QA+ +K+ + E+
Sbjct: 498 IQQLDQVHQNFMRYKLLMLRYSEYLIDDCDEKEKAQEAIQKLENVTQAVNQKMGLPTTEE 557
Query: 649 -TQLNIKRQLDLNXLQQTSVFMQE 717
T+L + Q N L+ V +++
Sbjct: 558 LTKLYYRFQCQFNVLEPGRVLIRQ 581
>AC024849-1|AAK68546.2| 374|Caenorhabditis elegans Hypothetical
protein Y67D8B.1 protein.
Length = 374
Score = 35.1 bits (77), Expect = 0.054
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = +1
Query: 205 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 384
M KL +CF ++ +P D ++PV L C H +C +C CP
Sbjct: 1 MNLEKLSELLCFQCGKLYESITKPDDEAILVPV--LGACLHSICILC--ATGLESPNSCP 56
Query: 385 LCRVESLHFNVYS 423
+C N+ S
Sbjct: 57 ICENPEAFGNIIS 69
>U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical
protein R02E12.4 protein.
Length = 639
Score = 34.3 bits (75), Expect = 0.094
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 205 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 384
+EF +QC+ICF V N+ +P+ L TCKH +C+ C CP
Sbjct: 19 LEFEDVQCHICFQV----NH--EPVTFL---------TCKHSICAGCAGRWLSSCSV-CP 62
Query: 385 LC--RVESLHFN 414
+C RV +H N
Sbjct: 63 MCRTRVREIHLN 74
>AF016666-6|AAB66086.1| 292|Caenorhabditis elegans Hypothetical
protein B0281.8 protein.
Length = 292
Score = 34.3 bits (75), Expect = 0.094
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 319 CKHQLCSMCXXXXXXXXXXPCPLCR--VESLHFNVYSINRN--VVDVIKCSVTSVAQWNK 486
C H LC C CP CR E +N+ S+++N ++ +IK VT + K
Sbjct: 28 CSHTLCEGCIKKLLKNGRVVCPFCREPTEVPVYNIKSLHKNFSLIQMIKI-VTKTTEVEK 86
Query: 487 INDNF 501
DNF
Sbjct: 87 NWDNF 91
>U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical
protein F42C5.4 protein.
Length = 712
Score = 33.1 bits (72), Expect = 0.22
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Frame = +1
Query: 205 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 384
+ FV L C+ C S+ + +F R + +C H LCS C CP
Sbjct: 22 LHFVSLVCSGCDSLGDRDRFFDNDKKRPCV------SSCNHSLCSQC-----FDKFTECP 70
Query: 385 LCRVESLHFNVYSINRNVVDVIKCSVTSVAQ--WNKINDNFDAAS 513
+C+ + Y R +V+ K + T + + WN + + S
Sbjct: 71 ICKEPLVRSENYQA-RKIVEHFKENPTMIIEKWWNSTANGSETCS 114
>AF099919-6|AAC68803.1| 261|Caenorhabditis elegans Hypothetical
protein F40G9.14 protein.
Length = 261
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/81 (24%), Positives = 30/81 (37%)
Frame = +1
Query: 208 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPL 387
E+V +C ICF E+ P + C H C C CP
Sbjct: 132 EYVDDECKICFEKYEVTGN-RSP----------RVFNCGHTYCESCIQVCKHQFQIKCPF 180
Query: 388 CRVESLHFNVYSINRNVVDVI 450
C S N +S N+ +++V+
Sbjct: 181 CTTTSYQIN-FSTNKLILEVL 200
>Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical
protein C55A6.1 protein.
Length = 228
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +1
Query: 274 PIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRNVVDV 447
PI + +I + C H+ C +C CP+CR + N+++ V+D+
Sbjct: 13 PICQCKMIVPTTIPACGHKFCFICLKGVYMNDMGGCPMCR-GPIDSNIFAQPSQVLDL 69
>AF016666-4|AAB66082.1| 331|Caenorhabditis elegans Hypothetical
protein B0281.3 protein.
Length = 331
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 319 CKHQLCSMCXXXXXXXXXXPCPLCR--VESLHFNVYSINRN--VVDVIKCSVTSVAQ 477
C H LC C CP CR E N+ S+++N ++ VIK ++ A+
Sbjct: 57 CCHTLCEGCIKKLLNYSRIVCPFCREPTEVPGNNIKSLHKNFSLIQVIKTTLVEEAE 113
>AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical
protein F42G2.5 protein.
Length = 374
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 319 CKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRN 435
C H +C C CP CR E+ +V S+ +N
Sbjct: 155 CGHSICQSCASKLAKNCVILCPFCRNETNVSSVASLPKN 193
>AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical
protein F43C11.8 protein.
Length = 338
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +1
Query: 205 MEFVKLQ-CNICFSVAEIKNYFMQPIDRLTIIPVLELDT----CKHQLCSMCXXXXXXXX 369
M F++ + CN FS A +N + + +L ++P L+L C H +C C
Sbjct: 1 MSFIECEICNEDFSSATDEN-IPRILSKL-LLPFLKLKNKNSGCGHTICHGCAEKLLQNS 58
Query: 370 XXPCPLCRVESLHFNVYSINRN 435
CP CR + V + +N
Sbjct: 59 MILCPFCREATNVSTVKDLQKN 80
>Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical
protein F17B5.6 protein.
Length = 363
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 508 ASLASVLFEK-SLLDDAEDSNNAA--NSDDTMLSESQAILKKLQIDIAEQ 648
+ L + LFE SLL AE N A N DDTML+E + ++ +AE+
Sbjct: 71 SGLGNQLFEVVSLLGMAEVLNRTAIFNKDDTMLNEKLSFFRETVPRVAEK 120
>U97011-1|AAB52324.1| 174|Caenorhabditis elegans Hypothetical
protein F31F7.3 protein.
Length = 174
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 737 FLILSNFSCIKTLVCCNXFKSNCRLMLSCVCSAMSICSFFSIACDSDSMV 588
FL L N ++ + + C + C CS SI + FS+ S S+V
Sbjct: 72 FLFLHNLRTYESNFFADKYVDICFFLPKCRCSPDSISTSFSLFSSSSSLV 121
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 595 LSESQAILKKLQIDIAEQT-QLNIKRQLDLNXLQQTSVFMQEKLDRIKNDYQQ 750
L+E++ +L+ +IA++T QL+ K LN + + EK++R K +Y+Q
Sbjct: 103 LAEAEKVLQATVQNIAQETEQLSNK----LNNVASDEAELDEKIERKKREYEQ 151
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 595 LSESQAILKKLQIDIAEQT-QLNIKRQLDLNXLQQTSVFMQEKLDRIKNDYQQ 750
L+E++ +L+ +IA++T QL+ K LN + + EK++R K +Y+Q
Sbjct: 165 LAEAEKVLQATVQNIAQETEQLSNK----LNNVASDEAELDEKIERKKREYEQ 213
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 595 LSESQAILKKLQIDIAEQT-QLNIKRQLDLNXLQQTSVFMQEKLDRIKNDYQQ 750
L+E++ +L+ +IA++T QL+ K LN + + EK++R K +Y+Q
Sbjct: 176 LAEAEKVLQATVQNIAQETEQLSNK----LNNVASDEAELDEKIERKKREYEQ 224
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 595 LSESQAILKKLQIDIAEQT-QLNIKRQLDLNXLQQTSVFMQEKLDRIKNDYQQ 750
L+E++ +L+ +IA++T QL+ K LN + + EK++R K +Y+Q
Sbjct: 103 LAEAEKVLQATVQNIAQETEQLSNK----LNNVASDEAELDEKIERKKREYEQ 151
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 595 LSESQAILKKLQIDIAEQT-QLNIKRQLDLNXLQQTSVFMQEKLDRIKNDYQQ 750
L+E++ +L+ +IA++T QL+ K LN + + EK++R K +Y+Q
Sbjct: 165 LAEAEKVLQATVQNIAQETEQLSNK----LNNVASDEAELDEKIERKKREYEQ 213
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 595 LSESQAILKKLQIDIAEQT-QLNIKRQLDLNXLQQTSVFMQEKLDRIKNDYQQ 750
L+E++ +L+ +IA++T QL+ K LN + + EK++R K +Y+Q
Sbjct: 176 LAEAEKVLQATVQNIAQETEQLSNK----LNNVASDEAELDEKIERKKREYEQ 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,249
Number of Sequences: 27780
Number of extensions: 276220
Number of successful extensions: 891
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -