Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11a18
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0127 - 18262499-18263104                                         29   2.8  
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116...    28   8.6  
02_01_0674 + 5020118-5020202,5020301-5020436,5021075-5021140,502...    28   8.6  

>05_04_0127 - 18262499-18263104
          Length = 201

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 471 EGVAPRPDLRPREGPRGPDGNGKFTPWSLSIVERGTSQLGSVS 343
           +  A   DLR   G    DGNG  TP  L+ V RG  +  +V+
Sbjct: 122 DAAAAEEDLRHAFGVFDADGNGVITPAELARVLRGIGEAATVA 164


>02_05_0030 +
           25209067-25209130,25209231-25209400,25210482-25211668,
           25211695-25212011,25212669-25213374,25214248-25215448
          Length = 1214

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +1

Query: 418 GSSRPLTRAQIGP---RGNPLWPGVSSLH 495
           GSS+PL+R+Q  P   R NPL P  ++ H
Sbjct: 637 GSSKPLSRSQSPPRISRRNPLCPSFAARH 665


>02_01_0674 +
           5020118-5020202,5020301-5020436,5021075-5021140,
           5021219-5021290,5021362-5021433,5024242-5024301,
           5024494-5024565,5024655-5024720,5024798-5024863,
           5024945-5025273,5025713-5025969,5026213-5026484,
           5026580-5026715,5026833-5026972,5027051-5027207,
           5027476-5027634
          Length = 714

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 474 PEGVAPRPDLRPREGPRGPDGNGKFTPWSLSIVERGTSQLGSVSG 340
           P    P P  RPR  P  P G+G     S+S   +G  + G  +G
Sbjct: 246 PPPFMPPPPRRPRNRPSHPRGSGDAPEGSVSPAGQGDKKQGLQTG 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,035,378
Number of Sequences: 37544
Number of extensions: 305096
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)