Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11a18
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.1  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 359 CEVPRSTMLKDQGVN 403
           C  PRST LK  G+N
Sbjct: 382 CPTPRSTHLKVSGIN 396


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -2

Query: 548 LIPAHKRLIPANSSPVSLCRELTPGQRGLPRGPIC 444
           +IP H +++     P    RE+   +  LP   +C
Sbjct: 409 MIPTHLKVLTIEEKPFVYVREIAFSESCLPEEILC 443


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = -2

Query: 545 IPAHKRLIPANSSPVSLCRELTPGQRGLPRGPICALVRGREDPMATG 405
           +P H ++   + +  ++    TPG   LP  P  + V   E   ++G
Sbjct: 214 LPGHAQMGRPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSG 260


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 416 MATGNLRLGL*A*WNVELHNSDRSLVETF 330
           +A+  L+  L A +NVELHNS    + +F
Sbjct: 453 LASDALKQILSAAYNVELHNSSPFSIYSF 481


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 416 MATGNLRLGL*A*WNVELHNSDRSLVETF 330
           +A+  L+  L A +NVELHNS    + +F
Sbjct: 491 LASDALKQILSAAYNVELHNSSPFSIYSF 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,772
Number of Sequences: 438
Number of extensions: 3734
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)