Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11a14
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.3  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   6.3  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   6.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.3  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   8.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 304 LYVHNQNYEEMYKYIPKDILPV 369
           LY H  NY+  Y  +P   L +
Sbjct: 166 LYNHTANYDSKYLVLPSGELHI 187


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 563 FCTCRFSCRKIKIIYSLF 616
           F + RFS +  +++Y+LF
Sbjct: 43  FRSLRFSWKSARVVYALF 60


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 563 FCTCRFSCRKIKIIYSLF 616
           F + RFS +  +++Y+LF
Sbjct: 43  FRSLRFSWKSARVVYALF 60


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 238 EYLNNGYLSGGKALHPEKQP 179
           +Y+N  ++ GGKA  P   P
Sbjct: 89  KYVNGEWVPGGKAEVPPSNP 108


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 130 KISHFLQMTP 159
           K+SHFL +TP
Sbjct: 18  KLSHFLSITP 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,210
Number of Sequences: 336
Number of extensions: 3953
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)