Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11a14
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    54   2e-08
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    30   0.23 
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      30   0.31 
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   3.8  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   3.8  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   6.7  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    25   6.7  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.8  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    25   8.8  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   8.8  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +1

Query: 166 IKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNEKNKKRLYVHNQNYEE-MYK 342
           I++    SQD  P R    + +N P GF + FN IK  ++E   K++++   NY+  + +
Sbjct: 189 IRQASSISQDYYPERMGKFYVINAPWGFSSAFNLIKGFLDEATVKKIHILGSNYKSALLE 248

Query: 343 YIPKDILPVEYGGN 384
            IP D LP + GGN
Sbjct: 249 QIPADNLPAKLGGN 262


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +1

Query: 235 TPTGFETIFNTIKALMNEKNKKRLYVHNQNYEEMYKYIPKDILPVEYGGNGGSIEEIID 411
           +P  F +++N IK  +  +   ++ V  Q+  ++ KYI   ++P   GG    I + I+
Sbjct: 244 SPWIFRSVWNIIKGWIKPEIAAKI-VFTQSANDLEKYIDYSVIPTSLGGGNKKIFQYIE 301


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +1

Query: 313 HNQNYEEMYKYIPKDILPVEYGGNGG-SIEEIIDYWRKKVKEYSDWLEEDDQYGTDESKR 489
           H  +Y  M + +     P+E       S    +++WR  + E SD  EE+D      SK 
Sbjct: 544 HRSSYVYMNELVDHFFPPIEVSTRDEVSSFTDVNFWRSPLLELSD--EEEDDTNKSTSKS 601

Query: 490 PGKPKTAE 513
           P  PK  +
Sbjct: 602 PKTPKNTK 609


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = -2

Query: 534 TLDAEHILSGLRFPWSL---GLVRTVLIVF 454
           TL+   IL  LRFPW +   G+++T+L++F
Sbjct: 88  TLNVLSILLYLRFPWIIGEAGVLKTLLMLF 117


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 388 GSIEEIIDYWRKKVKEYSDWLE 453
           GSI +I   WRKK+ EY  +LE
Sbjct: 172 GSIYDICFRWRKKLIEYRAFLE 193


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 130 KISHFLQMTPMLIKKMVVASQDAMPFRQKGTHYLN 234
           +ISH L++  +L+K     + D   F  K T+ LN
Sbjct: 528 RISHTLELQDILVKLSTPKNNDVFIFSSKITNKLN 562


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 573 QVQNLIEFKLPEGTLDAEHILS-GLRFPWSLGLVRTVLIVFFQPVTIFLDFFP 418
           QV NL    LP GT+D++ + S   R+  S   +R     F    T+ LD  P
Sbjct: 147 QVNNLEIIHLPPGTVDSDILASCHARYICSTSYLRMTSSDFTTADTLVLDIDP 199


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -2

Query: 429 DFFPPVIYNFFNRTTVPAIFYW*NVLRDIFVHLFIILVVDVEAFFIFFV 283
           D  P +  +  + +  P       +L  IF H    L +D+E  F F +
Sbjct: 245 DLLPIITASLASMSDFPVALRISRILNIIFQHYVTSLTLDIEVIFSFII 293


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 169 KKMVVASQDAMP-FRQKGTHYLNTPTGFE---TIFNTIKALMNEKNKKRLYVHNQN 324
           K+M ++S DA+     K     N     E   T+      L +E N+   +VHNQN
Sbjct: 278 KEMQISSLDAVDKLEDKPVSNDNIKANIESSTTVDRASSQLESENNESTFFVHNQN 333


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +1

Query: 25  SDVLAVYFVLEKIVMMEDDNAIVAGIFFVADLDALKISHFLQM 153
           +++  V  VLE I  ++D + +VA  F +ADL  +  ++FL++
Sbjct: 138 NEIKRVLGVLEDI--LKDRDYLVANRFTIADLSFISWNNFLEI 178


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 138 SFLTNDTNAHQENGGCFSGC-NAFPPERYPLFKYSDRIRNNFQYYKSINE 284
           S L ND      + G  SG  N+F   ++P+ ++  R+R     +   NE
Sbjct: 724 SVLRNDKLIKSIHPGSLSGISNSFVNSKHPIEQWQSRLRKILHLFSGRNE 773


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,166
Number of Sequences: 5004
Number of extensions: 61514
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)