Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11a14
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72508-9|CAA96639.2| 410|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z46996-9|CAA87097.2| 400|Caenorhabditis elegans Hypothetical pr... 37 0.013
Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z74041-4|CAD56597.1| 394|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z74041-3|CAA98522.1| 368|Caenorhabditis elegans Hypothetical pr... 33 0.16
U58734-6|AAB52505.3| 383|Caenorhabditis elegans Hypothetical pr... 31 0.66
AC006633-2|AAK68372.1| 321|Caenorhabditis elegans Hypothetical ... 31 0.66
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z49889-2|CAD44149.1| 553|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z49889-1|CAA90066.2| 591|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear recep... 29 2.0
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 29 2.7
Z70783-8|CAA94859.1| 175|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 28 4.7
U13072-3|AAK31396.4| 326|Caenorhabditis elegans Serpentine rece... 28 4.7
AF098996-6|AAC68709.1| 481|Caenorhabditis elegans Hypothetical ... 28 4.7
AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS fact... 28 4.7
Z72502-8|CAD44097.1| 374|Caenorhabditis elegans Hypothetical pr... 27 8.2
>Z72508-9|CAA96639.2| 410|Caenorhabditis elegans Hypothetical
protein F28H7.8 protein.
Length = 410
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Frame = +1
Query: 49 VLEKIVMMEDDNAIVAGIFFVADLDALKISHFLQMT---PMLIKKMVVASQDAMPFRQKG 219
+ +++ ME + + + ++ DL+AL L P + +V Q F K
Sbjct: 139 IQRRLMKMEAETGVQCYMHYIFDLEALNFDPTLLGVVNGPFRVSWQLVG-QHYREFIDKF 197
Query: 220 THYLNTPTGFETIFNTIKALMNEKNKKRLYVHNQNY-EEMYKYIPKDILPVEYGG 381
+N+P+ +++ + + E++K+R+ N+ EE+ + K+ LP YGG
Sbjct: 198 I-VINSPSYINVLWSALSPFIPEQSKQRIVFAGSNWKEELLDIVDKECLPERYGG 251
>Z46996-9|CAA87097.2| 400|Caenorhabditis elegans Hypothetical
protein C34C12.6 protein.
Length = 400
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Frame = +1
Query: 109 VADLDALKISHFLQMTPMLIKKMVVAS---QDAMPFRQKGTHYLNTPTGFETIFNTIKAL 279
+ DL+ + I+ ++ +K + S QD P + + N P ++ +
Sbjct: 171 IFDLNTVNITDYVNPMSGYMKLWQIRSELWQDWFPEMVQRIYLTNPPRLLGLLWKVARVF 230
Query: 280 MNEKNKKRLYVHNQNYEEMYKYIPKDILPVEYGG 381
++E+N KR+ + + + K++P ++P EYGG
Sbjct: 231 LSEENLKRIEIISDKSDLAGKFLPPWLVPKEYGG 264
>Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical
protein T13H5.2 protein.
Length = 408
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/112 (19%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Frame = +1
Query: 49 VLEKIVMMEDDNAIVAGIFFVADLDALKISHFLQMTPMLIKKMVVASQDAMPFRQKGTHY 228
V++ I ME + G + DLD L + ++ M+ Q+ P +
Sbjct: 153 VMQIIRKMEKEQGKPLGTSVIFDLDGLSMVQIDLAALKVVTTMLSQLQEMFPDVIRKIFI 212
Query: 229 LNTPTGFETIFNTIKALMNEKNKKRLYVHNQNYEEMYK-YIPKDILPVEYGG 381
+NTPT + +++ I + ++ ++++ + ++++ K I +++L +GG
Sbjct: 213 VNTPTFIQVLWSMISPCLAKQTQQKVKILGNDWKQHLKENIGEEVLFERWGG 264
>Z74041-4|CAD56597.1| 394|Caenorhabditis elegans Hypothetical
protein T03F7.7b protein.
Length = 394
Score = 33.1 bits (72), Expect = 0.16
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)
Frame = +1
Query: 22 ISDVLAVYFVLEK-----IVMMEDDNAIVAGIFFVADLDALKISHFLQMT--PMLIKKMV 180
+S VL YF+L++ + E + + + DL L + F+ P + ++V
Sbjct: 126 LSYVLHSYFMLQENFSRAMAHTERKTGKTSSVVCILDLKGLNLMDFMNPLSGPAQLARLV 185
Query: 181 VASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNEKNKKRLYVHNQNYEEMYKYIPKDI 360
V L P G ++ + + + N N E++ KY+ +
Sbjct: 186 VQVWAEYFSEHLCKLLLINPPGIISVMWQVTKRLVDPNTVEKLAFLSNVEDLKKYLEPEA 245
Query: 361 LPVEYGG 381
+PVEYGG
Sbjct: 246 IPVEYGG 252
>Z74041-3|CAA98522.1| 368|Caenorhabditis elegans Hypothetical
protein T03F7.7a protein.
Length = 368
Score = 33.1 bits (72), Expect = 0.16
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)
Frame = +1
Query: 22 ISDVLAVYFVLEK-----IVMMEDDNAIVAGIFFVADLDALKISHFLQMT--PMLIKKMV 180
+S VL YF+L++ + E + + + DL L + F+ P + ++V
Sbjct: 126 LSYVLHSYFMLQENFSRAMAHTERKTGKTSSVVCILDLKGLNLMDFMNPLSGPAQLARLV 185
Query: 181 VASQDAMPFRQKGTHYLNTPTGFETIFNTIKALMNEKNKKRLYVHNQNYEEMYKYIPKDI 360
V L P G ++ + + + N N E++ KY+ +
Sbjct: 186 VQVWAEYFSEHLCKLLLINPPGIISVMWQVTKRLVDPNTVEKLAFLSNVEDLKKYLEPEA 245
Query: 361 LPVEYGG 381
+PVEYGG
Sbjct: 246 IPVEYGG 252
>U58734-6|AAB52505.3| 383|Caenorhabditis elegans Hypothetical
protein T27A10.7 protein.
Length = 383
Score = 31.1 bits (67), Expect = 0.66
Identities = 26/152 (17%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Frame = +1
Query: 97 GIFFVADLDALKISHFLQMTPMLIKKMVVASQDAMPFRQKGTHYLNTPTGFETIFNTIKA 276
G+ + DLD + T + ++ Q+ P + + +N P ++ +
Sbjct: 162 GVIIIMDLDGFSMDLLYTPTLKVYMSLLTMLQNIFPDFARRIYIINCPAMMSAVYAMVSP 221
Query: 277 LMNEKNKKRLYVHNQNYE-EMYKYIPKDILPVEYGGNGGSIEEIIDY-WRKKVKEYSDWL 450
+++ + ++++ +++++ + + I ++ + + +GG D KV E S W
Sbjct: 222 VLSSQTREKVRFLDKDWKNHLIEEIGEENIFMHWGGVKKHEHPCGDIRMGGKVPE-SLWY 280
Query: 451 EEDDQYGTDESK--RPGKPKTAEDMFGVEGSF 540
+ + D +K P + KT M+G G +
Sbjct: 281 ADSHKLEGDRTKIAVPARSKTEIKMYGESGKY 312
>AC006633-2|AAK68372.1| 321|Caenorhabditis elegans Hypothetical
protein F35B3.1 protein.
Length = 321
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Frame = -2
Query: 105 KNTGNYCVVVFHHDNLF---QNKIYSQNI 28
+++G+Y V+HH N+F N+IY QNI
Sbjct: 268 ESSGHYMARVYHHGNVFLADDNRIYEQNI 296
>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical
protein K02C4.3 protein.
Length = 1307
Score = 30.7 bits (66), Expect = 0.88
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = +1
Query: 250 ETIFNTIKALMNEKN-----KKRLY-VHNQNYE----EMYKYIPKDILPVEYGGNGGSIE 399
ET+ N ++AL E+ + RL V +Q YE + +KY I+ N G
Sbjct: 681 ETLQNMLEALKTEERDCLAEEARLQEVIDQTYEVPELQQHKYELHAIIVHSGEANRGH-- 738
Query: 400 EIIDYWRKKVKEYSDWLEEDDQYGTDESKRPGKPKTAEDMFG 525
YW K+K+ D LEE ++ + R PK D FG
Sbjct: 739 ----YWTYKLKKSIDGLEEWEKLNDQNADRVDWPKVESDSFG 776
>Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical
protein F32B6.1 protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 397 EEIIDYWRKKVKEYSDWLEEDDQY 468
E++ID WR+ YSDW D++
Sbjct: 280 EDLIDGWRRHFTYYSDWCHAMDEF 303
>Z49889-2|CAD44149.1| 553|Caenorhabditis elegans Hypothetical
protein T06H11.1b protein.
Length = 553
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/52 (21%), Positives = 23/52 (44%)
Frame = +1
Query: 400 EIIDYWRKKVKEYSDWLEEDDQYGTDESKRPGKPKTAEDMFGVEGSFRQLEF 555
+ + +W + V++ W+ + G P D+ GV+G+ +L F
Sbjct: 310 QFVSFWNRSVRKVKQWMSRIRHGRRKSLQSTGGPNDTLDILGVDGTEEKLWF 361
>Z49889-1|CAA90066.2| 591|Caenorhabditis elegans Hypothetical
protein T06H11.1a protein.
Length = 591
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/52 (21%), Positives = 23/52 (44%)
Frame = +1
Query: 400 EIIDYWRKKVKEYSDWLEEDDQYGTDESKRPGKPKTAEDMFGVEGSFRQLEF 555
+ + +W + V++ W+ + G P D+ GV+G+ +L F
Sbjct: 348 QFVSFWNRSVRKVKQWMSRIRHGRRKSLQSTGGPNDTLDILGVDGTEEKLWF 399
>AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear receptor
NHR-4 protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 397 EEIIDYWRKKVKEYSDWLEEDDQY 468
E++ID WR+ YSDW D++
Sbjct: 280 EDLIDGWRRHFTYYSDWCHAMDEF 303
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 388 GSIEEIIDYWRKKVKEYSDWLEEDDQYGTDESKRPGKPKTAEDMFGVEGS 537
G + I+DY+ +++++YS ++ + Q T+ + PK FGV+G+
Sbjct: 4 GELVHILDYYFRQLRDYSRQVQLERQADTEGRRSSWSPK---HWFGVKGN 50
>Z70783-8|CAA94859.1| 175|Caenorhabditis elegans Hypothetical
protein ZK856.11 protein.
Length = 175
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 280 MNEKNKKRLYVHNQNYEEMYKYIPKDILPVEYGGNGGSIEEIID 411
M+ KKR Y+ N+ E Y+ + +DI+ G ++ E++D
Sbjct: 1 MSAATKKR-YITNKVGSEFYELVDEDIIAQVRQSRGNNLHEVLD 43
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 418 RKKVKEYSDWLEEDDQYGTDESKRP 492
RKK+ Y E+DD+ G+ SK+P
Sbjct: 3 RKKLAAYGQEFEDDDEEGSSVSKKP 27
>U13072-3|AAK31396.4| 326|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 3 protein.
Length = 326
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -2
Query: 171 LDEHWCHL*EMTNF*SI*ICNKKNTGNYCVVVFHHDNLFQNKIYSQNIGNVVLIGII 1
LD+ W + +T F IC +Y +V+F LFQ++++ N+ N+V ++
Sbjct: 14 LDDTWIYYQVLTYFEFACICL-----SYPMVIFLGYQLFQHRVFHNNLQNLVKAAVV 65
>AF098996-6|AAC68709.1| 481|Caenorhabditis elegans Hypothetical
protein T11F1.2 protein.
Length = 481
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 613 QRINNLYFPTGETASTKFNRIQVA*RNPRRRTYPQRSSVSLVAWTR 476
Q +N +YFP T++NR V +NP + T P+ S ++ TR
Sbjct: 420 QNLNFVYFPWMSVIITRYNRTVVIDKNP-KLTSPELSIFNVQYATR 464
>AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS factor
protein.
Length = 676
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -2
Query: 270 YSIENCFESCRSI*IMGTFLAERHCILRSNHHFLDEHWC---HL*EMTNF*SI*ICNKKN 100
+S+ N F+S +G L + + ++ HH +H H +MT + C N
Sbjct: 579 HSMPNAFDSAELYKYLGPALFDGNFAMQHQHHLQQQHQSQPNHPLQMTPIPPM-SCPPSN 637
Query: 99 TGNYCVVVFHHDNLFQNKIYSQ 34
G +FHH +L Q+ +SQ
Sbjct: 638 YGQ-SNFLFHHQHLNQHLHHSQ 658
>Z72502-8|CAD44097.1| 374|Caenorhabditis elegans Hypothetical
protein C08B6.11 protein.
Length = 374
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 250 ETIFNTIKALMNEKNKKRLYVHNQNYEEMYKYIPKDILPVEY 375
+TIF + EK++ RL N Y+ + KY+PK+ L EY
Sbjct: 72 DTIFYDELETIAEKSETRLNCLNY-YKMVQKYLPKNALLFEY 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,350,371
Number of Sequences: 27780
Number of extensions: 346921
Number of successful extensions: 1203
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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