Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11a11
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.1  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   7.2  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   7.2  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   7.2  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   7.2  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   7.2  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 178 MTHNNDVEIKSHDEYQYLK 234
           +TH    EIK HD+  +LK
Sbjct: 290 LTHKYTHEIKLHDKTPFLK 308


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 428 FESVDPEIIHSSSSITPLVN 369
           F    P + H  +S+TP+VN
Sbjct: 60  FSINQPYLNHFDNSVTPMVN 79


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 428 FESVDPEIIHSSSSITPLVN 369
           F    P + H  +S+TP+VN
Sbjct: 60  FSINQPYLNHFDNSVTPMVN 79


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 264 IARFYDLVDKF*ILIFIMRLYFDIVIVCHYVFL 166
           ++ F     K  ++I +  LYFD++++  ++ L
Sbjct: 203 VSNFEYFQRKILLMIQLYYLYFDVIVISTFLQL 235


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 264 IARFYDLVDKF*ILIFIMRLYFDIVIVCHYVFL 166
           ++ F     K  ++I +  LYFD++++  ++ L
Sbjct: 129 VSNFEYFQRKILLMIQLYYLYFDVIVISTFLQL 161


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 428 FESVDPEIIHSSSSITPLVN 369
           F    P + H  +S+TP+VN
Sbjct: 60  FSINQPYLNHFDNSVTPMVN 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,026
Number of Sequences: 336
Number of extensions: 3476
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)