Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11a11
         (687 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089595-1|AAL90333.1|  321|Drosophila melanogaster RE18955p pro...   220   2e-57
AF073994-3|AAC27622.1|  321|Drosophila melanogaster thymidylate ...   220   2e-57
AE014134-521|AAF51176.1|  321|Drosophila melanogaster CG3181-PA ...   220   2e-57
BT003642-1|AAO39646.1| 1324|Drosophila melanogaster AT15782p pro...    32   0.85 
AE013599-3664|AAF47046.2| 1324|Drosophila melanogaster CG30183-P...    32   0.85 
BT009980-1|AAQ22449.1| 1105|Drosophila melanogaster RE54143p pro...    30   2.6  
AY260057-2|AAO85038.1| 1413|Drosophila melanogaster Hmr protein.       30   2.6  
AY260056-2|AAO85036.1| 1413|Drosophila melanogaster Hmr protein.       30   2.6  
AY260055-2|AAO85034.1| 1413|Drosophila melanogaster Hmr protein.       30   2.6  
AY260051-1|AAO84261.1| 1413|Drosophila melanogaster Hmr protein.       30   2.6  
AE014298-1470|AAF46605.2| 1413|Drosophila melanogaster CG1619-PB...    30   2.6  
BT001640-1|AAN71395.1|  475|Drosophila melanogaster RE40923p pro...    30   3.4  
AE014296-2218|AAN11841.1|  475|Drosophila melanogaster CG32115-P...    30   3.4  
AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA...    29   7.9  
AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB...    29   7.9  

>AY089595-1|AAL90333.1|  321|Drosophila melanogaster RE18955p
           protein.
          Length = 321

 Score =  220 bits (537), Expect = 2e-57
 Identities = 97/158 (61%), Positives = 122/158 (77%)
 Frame = +1

Query: 208 SHDEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQRYSLHNNTLPLLTTKRVFTRGVI 387
           + DE  YL L+  II +G++R+DRT VGTLS+FG+  R+ + N+  PLLTTKRVF R V 
Sbjct: 33  NRDEMHYLDLLRHIIANGEQRMDRTEVGTLSVFGSQMRFDMRNS-FPLLTTKRVFFRAVA 91

Query: 388 EELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGFQWRHSGAK 567
           EELLW ++G TD+K L AK VHIWD N SR FLD +GFT R  GDLGPVYGFQWRH GA+
Sbjct: 92  EELLWFVAGKTDAKLLQAKNVHIWDGNSSREFLDKMGFTGRAVGDLGPVYGFQWRHFGAQ 151

Query: 568 YIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWN 681
           Y  C  DY+G+GIDQL+ VID+I+NNP+DRR+++ AWN
Sbjct: 152 YGTCDDDYSGKGIDQLRQVIDTIRNNPSDRRIIMSAWN 189


>AF073994-3|AAC27622.1|  321|Drosophila melanogaster thymidylate
           synthase protein.
          Length = 321

 Score =  220 bits (537), Expect = 2e-57
 Identities = 97/158 (61%), Positives = 122/158 (77%)
 Frame = +1

Query: 208 SHDEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQRYSLHNNTLPLLTTKRVFTRGVI 387
           + DE  YL L+  II +G++R+DRT VGTLS+FG+  R+ + N+  PLLTTKRVF R V 
Sbjct: 33  NRDEMHYLDLLRHIIANGEQRMDRTEVGTLSVFGSQMRFDMRNS-FPLLTTKRVFFRAVA 91

Query: 388 EELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGFQWRHSGAK 567
           EELLW ++G TD+K L AK VHIWD N SR FLD +GFT R  GDLGPVYGFQWRH GA+
Sbjct: 92  EELLWFVAGKTDAKLLQAKNVHIWDGNSSREFLDKMGFTGRAVGDLGPVYGFQWRHFGAQ 151

Query: 568 YIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWN 681
           Y  C  DY+G+GIDQL+ VID+I+NNP+DRR+++ AWN
Sbjct: 152 YGTCDDDYSGKGIDQLRQVIDTIRNNPSDRRIIMSAWN 189


>AE014134-521|AAF51176.1|  321|Drosophila melanogaster CG3181-PA
           protein.
          Length = 321

 Score =  220 bits (537), Expect = 2e-57
 Identities = 97/158 (61%), Positives = 122/158 (77%)
 Frame = +1

Query: 208 SHDEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQRYSLHNNTLPLLTTKRVFTRGVI 387
           + DE  YL L+  II +G++R+DRT VGTLS+FG+  R+ + N+  PLLTTKRVF R V 
Sbjct: 33  NRDEMHYLDLLRHIIANGEQRMDRTEVGTLSVFGSQMRFDMRNS-FPLLTTKRVFFRAVA 91

Query: 388 EELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGFQWRHSGAK 567
           EELLW ++G TD+K L AK VHIWD N SR FLD +GFT R  GDLGPVYGFQWRH GA+
Sbjct: 92  EELLWFVAGKTDAKLLQAKNVHIWDGNSSREFLDKMGFTGRAVGDLGPVYGFQWRHFGAQ 151

Query: 568 YIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWN 681
           Y  C  DY+G+GIDQL+ VID+I+NNP+DRR+++ AWN
Sbjct: 152 YGTCDDDYSGKGIDQLRQVIDTIRNNPSDRRIIMSAWN 189


>BT003642-1|AAO39646.1| 1324|Drosophila melanogaster AT15782p
           protein.
          Length = 1324

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 449 TPLAANAFESVDPEIIHSSSSITPLVNT 366
           TP  A A ++VDP ++H+SSS+  L+ T
Sbjct: 857 TPQQAQASQAVDPTVLHNSSSLGELMQT 884


>AE013599-3664|AAF47046.2| 1324|Drosophila melanogaster CG30183-PA
           protein.
          Length = 1324

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 449 TPLAANAFESVDPEIIHSSSSITPLVNT 366
           TP  A A ++VDP ++H+SSS+  L+ T
Sbjct: 857 TPQQAQASQAVDPTVLHNSSSLGELMQT 884


>BT009980-1|AAQ22449.1| 1105|Drosophila melanogaster RE54143p
           protein.
          Length = 1105

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 681 IPCTYQHSSVCWIVLNRIYYTLQLV 607
           + C+++H  V W+VL   Y+ LQ V
Sbjct: 167 VMCSHEHCEVTWLVLRAFYHELQAV 191


>AY260057-2|AAO85038.1| 1413|Drosophila melanogaster Hmr protein.
          Length = 1413

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 681 IPCTYQHSSVCWIVLNRIYYTLQLV 607
           + C+++H  V W+VL   Y+ LQ V
Sbjct: 363 VMCSHEHCEVTWLVLRAFYHELQAV 387


>AY260056-2|AAO85036.1| 1413|Drosophila melanogaster Hmr protein.
          Length = 1413

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 681 IPCTYQHSSVCWIVLNRIYYTLQLV 607
           + C+++H  V W+VL   Y+ LQ V
Sbjct: 363 VMCSHEHCKVTWLVLRAFYHELQAV 387


>AY260055-2|AAO85034.1| 1413|Drosophila melanogaster Hmr protein.
          Length = 1413

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 681 IPCTYQHSSVCWIVLNRIYYTLQLV 607
           + C+++H  V W+VL   Y+ LQ V
Sbjct: 363 VMCSHEHCEVTWLVLRAFYHELQAV 387


>AY260051-1|AAO84261.1| 1413|Drosophila melanogaster Hmr protein.
          Length = 1413

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 681 IPCTYQHSSVCWIVLNRIYYTLQLV 607
           + C+++H  V W+VL   Y+ LQ V
Sbjct: 363 VMCSHEHCEVTWLVLRAFYHELQAV 387


>AE014298-1470|AAF46605.2| 1413|Drosophila melanogaster CG1619-PB
           protein.
          Length = 1413

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 681 IPCTYQHSSVCWIVLNRIYYTLQLV 607
           + C+++H  V W+VL   Y+ LQ V
Sbjct: 363 VMCSHEHCEVTWLVLRAFYHELQAV 387


>BT001640-1|AAN71395.1|  475|Drosophila melanogaster RE40923p
           protein.
          Length = 475

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 30/115 (26%), Positives = 45/115 (39%)
 Frame = +1

Query: 214 DEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQRYSLHNNTLPLLTTKRVFTRGVIEE 393
           D+Y  L      I + D ++     GTLSIF          N    L  K +    V + 
Sbjct: 366 DDYAALLEKQCTISNLDTKIIFNAKGTLSIFTEKVDILRSGNCESFLKLKNLKKIFVPDN 425

Query: 394 LLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGFQWRHS 558
           ++     + D     A GV + D N + + L+++        D GP Y F W HS
Sbjct: 426 MIKYEKATLDR--FLALGVELIDYNSASSGLESVS-------DSGPDYSFLWNHS 471


>AE014296-2218|AAN11841.1|  475|Drosophila melanogaster CG32115-PA
           protein.
          Length = 475

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 30/115 (26%), Positives = 45/115 (39%)
 Frame = +1

Query: 214 DEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQRYSLHNNTLPLLTTKRVFTRGVIEE 393
           D+Y  L      I + D ++     GTLSIF          N    L  K +    V + 
Sbjct: 366 DDYAALLEKQCTISNLDTKIIFNAKGTLSIFTEKVDILRSGNCESFLKLKNLKKIFVPDN 425

Query: 394 LLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGFQWRHS 558
           ++     + D     A GV + D N + + L+++        D GP Y F W HS
Sbjct: 426 MIKYEKATLDR--FLALGVELIDYNSASSGLESVS-------DSGPDYSFLWNHS 471


>AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA,
            isoform A protein.
          Length = 1618

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 363  FSCEKWKRVIVKRVPLHRSKYRKGTYPRSINSFIARFYDLVD--KF*ILIFIM 211
            F  E  K        L R K +K    R IN F+A FYDL +  +F I IF++
Sbjct: 1175 FLTESQKHYYTAMKKLGRKKPQK-VIKRPINHFLAMFYDLSNSRRFEIAIFVL 1226


>AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB,
            isoform B protein.
          Length = 2327

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 363  FSCEKWKRVIVKRVPLHRSKYRKGTYPRSINSFIARFYDLVD--KF*ILIFIM 211
            F  E  K        L R K +K    R IN F+A FYDL +  +F I IF++
Sbjct: 1884 FLTESQKHYYTAMKKLGRKKPQK-VIKRPINHFLAMFYDLSNSRRFEIAIFVL 1935


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,384,080
Number of Sequences: 53049
Number of extensions: 562282
Number of successful extensions: 1542
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)