Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11a11
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099673-1|AAC97508.1| 315|Caenorhabditis elegans thymidylate s... 239 2e-63
AC006708-20|AAF60422.1| 312|Caenorhabditis elegans Hypothetical... 239 2e-63
AC006696-2|ABQ13058.1| 129|Caenorhabditis elegans Hypothetical ... 31 0.58
AC006696-1|AAF39991.1| 151|Caenorhabditis elegans Hypothetical ... 31 0.58
AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical ... 30 1.8
Z81586-12|CAB04692.1| 557|Caenorhabditis elegans Hypothetical p... 29 2.4
U40942-9|AAC47074.6| 703|Caenorhabditis elegans Synaptogenesis ... 28 5.4
U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical p... 28 5.4
AF143149-1|AAD37915.1| 260|Caenorhabditis elegans R151.8B prote... 28 5.4
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin ... 28 7.2
Z81586-13|CAN86915.1| 563|Caenorhabditis elegans Hypothetical p... 27 9.5
U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AF099673-1|AAC97508.1| 315|Caenorhabditis elegans thymidylate
synthase protein.
Length = 315
Score = 239 bits (584), Expect = 2e-63
Identities = 104/160 (65%), Positives = 124/160 (77%)
Frame = +1
Query: 208 SHDEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQRYSLHNNTLPLLTTKRVFTRGVI 387
+ DEY+YLK ++QI++ G +R DRTG GT+SIFG +Y L N T+PLLTTKRV+ +GV+
Sbjct: 28 NQDEYKYLKQVEQILREGTRRDDRTGTGTISIFGMQSKYCLRNGTIPLLTTKRVYWKGVL 87
Query: 388 EELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGFQWRHSGAK 567
EELLW ISGSTD K L K V IW+ NG R FLDNLGFT REEGDLGPVYGFQWRH GAK
Sbjct: 88 EELLWFISGSTDGKLLMEKNVKIWEKNGDRAFLDNLGFTSREEGDLGPVYGFQWRHFGAK 147
Query: 568 YIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWNSS 687
Y+DC TDY+GQG+DQL VI IK P RR+++ AWN S
Sbjct: 148 YVDCHTDYSGQGVDQLAEVIRQIKEQPDSRRIIMSAWNPS 187
>AC006708-20|AAF60422.1| 312|Caenorhabditis elegans Hypothetical
protein Y110A7A.4 protein.
Length = 312
Score = 239 bits (584), Expect = 2e-63
Identities = 104/160 (65%), Positives = 124/160 (77%)
Frame = +1
Query: 208 SHDEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQRYSLHNNTLPLLTTKRVFTRGVI 387
+ DEY+YLK ++QI++ G +R DRTG GT+SIFG +Y L N T+PLLTTKRV+ +GV+
Sbjct: 25 NQDEYKYLKQVEQILREGTRRDDRTGTGTISIFGMQSKYCLRNGTIPLLTTKRVYWKGVL 84
Query: 388 EELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGFQWRHSGAK 567
EELLW ISGSTD K L K V IW+ NG R FLDNLGFT REEGDLGPVYGFQWRH GAK
Sbjct: 85 EELLWFISGSTDGKLLMEKNVKIWEKNGDRAFLDNLGFTSREEGDLGPVYGFQWRHFGAK 144
Query: 568 YIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWNSS 687
Y+DC TDY+GQG+DQL VI IK P RR+++ AWN S
Sbjct: 145 YVDCHTDYSGQGVDQLAEVIRQIKEQPDSRRIIMSAWNPS 184
>AC006696-2|ABQ13058.1| 129|Caenorhabditis elegans Hypothetical
protein W08E12.8b protein.
Length = 129
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2
Query: 533 TGPRSPSSLSVNPKLSRKFLDPFASQMCTPLAANAFE 423
T S S LS+N LS F P A Q+ PLA N F+
Sbjct: 37 TPSSSASPLSINQLLSSSFSQPPAPQLPVPLAFNPFQ 73
>AC006696-1|AAF39991.1| 151|Caenorhabditis elegans Hypothetical
protein W08E12.8a protein.
Length = 151
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2
Query: 533 TGPRSPSSLSVNPKLSRKFLDPFASQMCTPLAANAFE 423
T S S LS+N LS F P A Q+ PLA N F+
Sbjct: 59 TPSSSASPLSINQLLSSSFSQPPAPQLPVPLAFNPFQ 95
>AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical
protein T24C4.2 protein.
Length = 423
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -2
Query: 518 PSSLSVNPKLSRKFLDPFASQMCTPLAANAFESVDPEIIHSSSSITPL 375
P+S S+ P + FL P SQ+ L+++ E+ P+I HS ++ P+
Sbjct: 309 PAS-SLVPTPAPPFLTPTPSQVSPALSSSVDENEAPKIFHSLEAVRPI 355
>Z81586-12|CAB04692.1| 557|Caenorhabditis elegans Hypothetical
protein T05F1.1a protein.
Length = 557
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -2
Query: 422 SVDPEIIHSSSSITPLVNTRLVVRSGSVLL*REYLCIAPNIERVPTPVLSTLLSP 258
SV +++ +SI+P N LV + S+ + NI+R+P LSTL SP
Sbjct: 332 SVAAQLLRRLNSISPKKNIELVTKKISLTTVSAWEHEKFNIKRMPAITLSTLPSP 386
>U40942-9|AAC47074.6| 703|Caenorhabditis elegans Synaptogenesis
abnormal protein 1 protein.
Length = 703
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 610 GLYPVQYNQSDNQYILHHYV 551
GLYP +N S N+YI + YV
Sbjct: 647 GLYPKCFNNSANEYIYNRYV 666
>U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical
protein R151.8 protein.
Length = 731
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 521 SPSSLSVNPKLSRKFLDPFASQMCTPLAANAFESVDPEIIHSSSSITP 378
SP+ S +P+L RK D F S + TP +S+ + S++P
Sbjct: 601 SPTKRSADPELQRKRNDAFLSSLRTPDPTPKKDSIMQQYFGGDLSMSP 648
>AF143149-1|AAD37915.1| 260|Caenorhabditis elegans R151.8B protein
protein.
Length = 260
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 521 SPSSLSVNPKLSRKFLDPFASQMCTPLAANAFESVDPEIIHSSSSITP 378
SP+ S +P+L RK D F S + TP +S+ + S++P
Sbjct: 130 SPTKRSADPELQRKRNDAFLSSLRTPDPTPKKDSIMQQYFGGDLSMSP 177
>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
protein T24A11.1b protein.
Length = 1006
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 305 LERCRGTLFTITRFHFSQLNEYLQEVL*KNYCG 403
+E+C+GTL I RF EY+ + ++Y G
Sbjct: 579 MEKCKGTLVDIWRFIGPHNEEYVNQSFDEHYTG 611
>Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical
protein T24A11.1a protein.
Length = 938
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 305 LERCRGTLFTITRFHFSQLNEYLQEVL*KNYCG 403
+E+C+GTL I RF EY+ + ++Y G
Sbjct: 575 MEKCKGTLVDIWRFIGPHNEEYVNQSFDEHYTG 607
>AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin
homologous protein 1 protein.
Length = 930
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 305 LERCRGTLFTITRFHFSQLNEYLQEVL*KNYCG 403
+E+C+GTL I RF EY+ + ++Y G
Sbjct: 579 MEKCKGTLVDIWRFIGPHNEEYVNQSFDEHYTG 611
>Z81586-13|CAN86915.1| 563|Caenorhabditis elegans Hypothetical
protein T05F1.1b protein.
Length = 563
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -2
Query: 392 SSITPLVNTRLVVRSGSVLL*REYLCIAPNIERVPTPVLSTLLSP 258
SSI+P N LV + S+ + NI+R+P LSTL SP
Sbjct: 348 SSISPKKNIELVTKKISLTTVSAWEHEKFNIKRMPAITLSTLPSP 392
>U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical
protein ZK328.4 protein.
Length = 532
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = -1
Query: 420 RRPGDHPQ*FFYNTSCKYSFSCEKWKRVIVKRVPLHRSKYRKGTYPRSINSFIARFYDLV 241
+RP D + F + S K+S + +V +K L K+R+ R + + R + +
Sbjct: 255 KRPTDEEEWFLLSLSEKFSGPIHEDAKVYIKETSLRYKKHRESLLTRLQDILVRRIFSAI 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,983,013
Number of Sequences: 27780
Number of extensions: 304860
Number of successful extensions: 766
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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