Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11a08
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 33 0.041
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 33 0.041
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 33 0.041
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 29 0.67
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 29 0.89
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 28 1.6
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 28 1.6
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 27 2.1
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 27 2.1
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 27 2.7
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 27 2.7
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 4.7
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 6.3
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 8.3
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 8.3
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 33.1 bits (72), Expect = 0.041
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +2
Query: 212 PLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCEKDFKNVYKF 391
P F E L H+ L A L V W +++ + S+W+ +F +
Sbjct: 10 PASIFSHETLLHVLNDLSAHDLAALERVSRSWNSIV----RRSSVWHNLYLSEFGTKHLR 65
Query: 392 AH-RLSRPQITWHELYRSLTLWR 457
H R+ + + W L+R + W+
Sbjct: 66 RHGRIEKKRRNWKGLFRRQSNWK 88
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 33.1 bits (72), Expect = 0.041
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 215 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCEK 367
L P EI I +FL A+ L + +V WK + D +W++ CE+
Sbjct: 110 LSLLPVEISFRILSFLDARSLCQAAQVSKHWKELADD----DVIWHRMCEQ 156
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 33.1 bits (72), Expect = 0.041
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 218 ESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLW 349
E FP E+ +F++L L KC+ + RWK +++ + +L+
Sbjct: 74 EVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIWKALY 117
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 29.1 bits (62), Expect = 0.67
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 188 SDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI-DTLNKYHSLWYKF 358
S N T L + P EIL IF+FL + L + C WK ++ D L+ + ++ F
Sbjct: 23 SSNNTNRTVL-NLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRTAFFHHF 79
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 28.7 bits (61), Expect = 0.89
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 227 PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCEKDF 373
P E+L I L K + +C +VC W+ D + K SL FC DF
Sbjct: 140 PREVLLCILQQLNFKSIVQCMQVCKHWR---DCIKKEPSL---FCCLDF 182
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 442 RPVELVPSDLRTGEPVSEFVNVFKVL 365
+PV +PS L GE +S F N K+L
Sbjct: 853 QPVNTIPSSLSLGEQLSAFNNFMKLL 878
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = -3
Query: 505 GC*REFVVVLSSEVQLPPQSQRPVELVPSDLRTGEPVSEFVNVFKVLFAKLIPQ 344
GC + F ++ ++ +P + +++ G P+S F V + LF +LIP+
Sbjct: 173 GCFQVFTAPEKDSAEVVEEAGQPEYRLLTEVSNGAPLSSFFTVLE-LFTELIPE 225
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 487 VVVLSSEVQLPPQSQRPVELVPSDLRTGEP 398
+ L++E ++PPQ +P VPS + T P
Sbjct: 299 ITKLNNEKRIPPQLAQPTSHVPSFIDTNSP 328
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 227 PTEILSHIFTFLPAKQLTKCREVCIRWKN-VIDTL 328
P E+ +I ++L A +L VC W+N +I TL
Sbjct: 4 PNEVCFNILSYLEADELRCKSTVCTSWRNFIIPTL 38
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 209 TPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCEK--DFKNV 382
+P +IL I T+L K + E C V D ++W++FC + NV
Sbjct: 4 SPFLELSYDILLEISTYLDYKDIVHLSETCKSLSYVFDD----KTIWHRFCARVQGLTNV 59
Query: 383 YKFA-HRLSRPQITWHE 430
RP W +
Sbjct: 60 VPVVDDNYKRPYAVWKD 76
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +2
Query: 476 QHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLDTLQRSKRAVIYGDYNRYVE 655
Q Y ++ T VAS Q +R +R+ + + + Y L L ++ Y+R +
Sbjct: 749 QPYVDYVVETFVASSTQ-WRLMRD-VGSIRLQYACLQYMLAVLDGLNIDLLL--YSRILS 804
Query: 656 TDDTVLLMNSNLHLFITR 709
+ L N+NLH+++TR
Sbjct: 805 SKVRDNLQNNNLHVYLTR 822
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 437 RSLTLWRQLHLARQHYD--EFASATTVASEIQ 526
R T W HL R+HYD F + T AS I+
Sbjct: 278 RVQTFWTASHLWRRHYDILPFNVSPTTASPIE 309
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +1
Query: 223 VSHRNIIAHFHFSTSETVDE-----MPGSLHPLEERHRYPQQIP 339
++H I HF +TS DE MP + P+ + +P +P
Sbjct: 408 ITHPGIPNHFAKTTSSVFDEPPATRMPQTRSPVNDHSSFPSDLP 451
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +1
Query: 37 LNQKSQWKYVLKY*NYIKNTTLK 105
++ +++ +YVL+Y +Y+ NTT+K
Sbjct: 612 VDNENRKEYVLRYVDYLLNTTVK 634
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Frame = +2
Query: 590 DLDTLQRSKRAVI------YGDYNRYVETDDTVL 673
+LDTL KR + + DY Y ETDD V+
Sbjct: 545 ELDTLLNGKRDIDVQDWKRFTDYRSYTETDDIVI 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,898
Number of Sequences: 5004
Number of extensions: 58681
Number of successful extensions: 195
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -