Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11a08
         (723 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001595-1|AAN71350.1|  559|Drosophila melanogaster RE28319p pro...    37   0.032
AE014297-4385|AAF56899.2|  515|Drosophila melanogaster CG2010-PA...    37   0.032
AY069210-1|AAL39355.1|  511|Drosophila melanogaster GH26184p pro...    35   0.097
AE014297-4384|AAN14173.1|  511|Drosophila melanogaster CG2010-PB...    35   0.097
BT021444-1|AAX33592.1|  667|Drosophila melanogaster GH02866p pro...    34   0.23 
AE013599-3350|AAF46812.1|  667|Drosophila melanogaster CG6758-PA...    34   0.23 
BT003599-1|AAO39602.1|  391|Drosophila melanogaster GM10337p pro...    32   0.69 
AY078386-1|AAL83648.1|  491|Drosophila melanogaster F box/ubiqui...    32   0.69 
AF145603-1|AAD38578.1|  491|Drosophila melanogaster BcDNA.GH0243...    32   0.69 
AE014134-738|AAF51013.1|  491|Drosophila melanogaster CG15437-PA...    32   0.69 
BT021402-1|AAX33550.1|  437|Drosophila melanogaster LD12638p pro...    32   0.91 
AE013599-1328|AAF58635.1|  464|Drosophila melanogaster CG9003-PA...    32   0.91 
AY119098-1|AAM50958.1|  538|Drosophila melanogaster RE01138p pro...    30   2.8  
AF187980-1|AAG17034.1|  538|Drosophila melanogaster Partner of P...    30   2.8  
AE013599-3444|AAF46886.1|  538|Drosophila melanogaster CG9952-PA...    30   2.8  
AY118494-1|AAM49863.1|  740|Drosophila melanogaster LD05535p pro...    30   3.7  
AE013599-2751|AAF57649.3|  740|Drosophila melanogaster CG15087-P...    30   3.7  
BT025049-1|ABE73220.1|  577|Drosophila melanogaster IP16072p pro...    29   8.5  
BT014665-1|AAT27289.1| 1305|Drosophila melanogaster GH04794p pro...    29   8.5  
AY058417-1|AAL13646.1| 1100|Drosophila melanogaster GH19532p pro...    29   8.5  
AE014298-1273|AAF46443.4| 1247|Drosophila melanogaster CG7766-PA...    29   8.5  
AE014298-1272|AAO41642.2| 1248|Drosophila melanogaster CG7766-PB...    29   8.5  

>BT001595-1|AAN71350.1|  559|Drosophila melanogaster RE28319p
           protein.
          Length = 559

 Score = 36.7 bits (81), Expect = 0.032
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 209 TPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 316
           T +E  P ++L HIF++L  +++ +   +C RW+ +
Sbjct: 76  TTIEKLPDKVLLHIFSYLSHREICRLARICRRWRQI 111


>AE014297-4385|AAF56899.2|  515|Drosophila melanogaster CG2010-PA,
           isoform A protein.
          Length = 515

 Score = 36.7 bits (81), Expect = 0.032
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 209 TPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 316
           T +E  P ++L HIF++L  +++ +   +C RW+ +
Sbjct: 32  TTIEKLPDKVLLHIFSYLSHREICRLARICRRWRQI 67


>AY069210-1|AAL39355.1|  511|Drosophila melanogaster GH26184p
           protein.
          Length = 511

 Score = 35.1 bits (77), Expect = 0.097
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 215 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 316
           +E  P ++L HIF++L  +++ +   +C RW+ +
Sbjct: 30  IEKLPDKVLLHIFSYLSHREICRLARICRRWRQI 63


>AE014297-4384|AAN14173.1|  511|Drosophila melanogaster CG2010-PB,
           isoform B protein.
          Length = 511

 Score = 35.1 bits (77), Expect = 0.097
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 215 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 316
           +E  P ++L HIF++L  +++ +   +C RW+ +
Sbjct: 30  IEKLPDKVLLHIFSYLSHREICRLARICRRWRQI 63


>BT021444-1|AAX33592.1|  667|Drosophila melanogaster GH02866p
           protein.
          Length = 667

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 215 LESFPTEILSHIFTFLPA-KQLTKCREVCIRWKNVIDTL 328
           L   P EIL  IFT+LP    L  C  VC RW  ++  L
Sbjct: 24  LNVLPDEILEFIFTYLPPYGDLEHCSLVCKRWHAIVKNL 62


>AE013599-3350|AAF46812.1|  667|Drosophila melanogaster CG6758-PA
           protein.
          Length = 667

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 215 LESFPTEILSHIFTFLPA-KQLTKCREVCIRWKNVIDTL 328
           L   P EIL  IFT+LP    L  C  VC RW  ++  L
Sbjct: 24  LNVLPDEILEFIFTYLPPYGDLEHCSLVCKRWHAIVKNL 62


>BT003599-1|AAO39602.1|  391|Drosophila melanogaster GM10337p
           protein.
          Length = 391

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 227 PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCEKDFKNVYKFAHRLS 406
           P E++  IF +L    L    EVC +W +++   N   S+W  + ++ +     F     
Sbjct: 135 PVEVMLKIFAYLDDMSLWMASEVCKQWHDIVGK-NTAQSMWKAYIKQRWP---LFDSLAD 190

Query: 407 RPQITWHELYRSL 445
            P   W+ LY +L
Sbjct: 191 NP--NWYRLYGAL 201


>AY078386-1|AAL83648.1|  491|Drosophila melanogaster F box/ubiquitin
           conjugase protein.
          Length = 491

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 227 PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCEKDFKNVYKFAHRLS 406
           P E++  IF +L    L    EVC +W +++   N   S+W  + ++ +     F     
Sbjct: 235 PVEVMLKIFAYLDDMSLWMASEVCKQWHDIVGK-NTAQSMWKAYIKQRWP---LFDSLAD 290

Query: 407 RPQITWHELYRSL 445
            P   W+ LY +L
Sbjct: 291 NP--NWYRLYGAL 301


>AF145603-1|AAD38578.1|  491|Drosophila melanogaster BcDNA.GH02435
           protein.
          Length = 491

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 227 PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCEKDFKNVYKFAHRLS 406
           P E++  IF +L    L    EVC +W +++   N   S+W  + ++ +     F     
Sbjct: 235 PVEVMLKIFAYLDDMSLWMASEVCKQWHDIVGK-NTAQSMWKAYIKQRWP---LFDSLAD 290

Query: 407 RPQITWHELYRSL 445
            P   W+ LY +L
Sbjct: 291 NP--NWYRLYGAL 301


>AE014134-738|AAF51013.1|  491|Drosophila melanogaster CG15437-PA
           protein.
          Length = 491

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 227 PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCEKDFKNVYKFAHRLS 406
           P E++  IF +L    L    EVC +W +++   N   S+W  + ++ +     F     
Sbjct: 235 PVEVMLKIFAYLDDMSLWMASEVCKQWHDIVGK-NTAQSMWKAYIKQRWP---LFDSLAD 290

Query: 407 RPQITWHELYRSL 445
            P   W+ LY +L
Sbjct: 291 NP--NWYRLYGAL 301


>BT021402-1|AAX33550.1|  437|Drosophila melanogaster LD12638p
           protein.
          Length = 437

 Score = 31.9 bits (69), Expect = 0.91
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 197 EDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 319
           +DE+  ++  P E+L  +F++L    L +C +VC  W NV+
Sbjct: 22  DDEL--IKQLPKEVLLRVFSYLDVVSLCRCAQVCKYW-NVL 59


>AE013599-1328|AAF58635.1|  464|Drosophila melanogaster CG9003-PA
           protein.
          Length = 464

 Score = 31.9 bits (69), Expect = 0.91
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 197 EDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 319
           +DE+  ++  P E+L  +F++L    L +C +VC  W NV+
Sbjct: 49  DDEL--IKQLPKEVLLRVFSYLDVVSLCRCAQVCKYW-NVL 86


>AY119098-1|AAM50958.1|  538|Drosophila melanogaster RE01138p
           protein.
          Length = 538

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 203 EVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKN 313
           E T + +   E+L  IF  LP + L +  +VC  W++
Sbjct: 145 EGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRD 181


>AF187980-1|AAG17034.1|  538|Drosophila melanogaster Partner of
           Paired protein.
          Length = 538

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 203 EVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKN 313
           E T + +   E+L  IF  LP + L +  +VC  W++
Sbjct: 145 EGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRD 181


>AE013599-3444|AAF46886.1|  538|Drosophila melanogaster CG9952-PA
           protein.
          Length = 538

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 203 EVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKN 313
           E T + +   E+L  IF  LP + L +  +VC  W++
Sbjct: 145 EGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRD 181


>AY118494-1|AAM49863.1|  740|Drosophila melanogaster LD05535p
           protein.
          Length = 740

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 566 TKAGVVYYDLDTLQRSKRAVIYGDYNRYVETDDTVLLMNSN 688
           T+A VV  D  TL    + ++Y +YN+++   DT+  M  +
Sbjct: 37  TEAAVVK-DTQTLHSDMQTLVYENYNKFISATDTIRRMKDD 76


>AE013599-2751|AAF57649.3|  740|Drosophila melanogaster CG15087-PA
           protein.
          Length = 740

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 566 TKAGVVYYDLDTLQRSKRAVIYGDYNRYVETDDTVLLMNSN 688
           T+A VV  D  TL    + ++Y +YN+++   DT+  M  +
Sbjct: 37  TEAAVVK-DTQTLHSDMQTLVYENYNKFISATDTIRRMKDD 76


>BT025049-1|ABE73220.1|  577|Drosophila melanogaster IP16072p
           protein.
          Length = 577

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 203 EVTPLESFPTEILSHIFTFL 262
           EV P+E  P  +LSH++T+L
Sbjct: 467 EVAPIEVQPARVLSHLYTYL 486


>BT014665-1|AAT27289.1| 1305|Drosophila melanogaster GH04794p
           protein.
          Length = 1305

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 203 EVTPLESFPTEILSHIFTFL 262
           EV P+E  P  +LSH++T+L
Sbjct: 467 EVAPIEVQPARVLSHLYTYL 486


>AY058417-1|AAL13646.1| 1100|Drosophila melanogaster GH19532p
           protein.
          Length = 1100

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 203 EVTPLESFPTEILSHIFTFL 262
           EV P+E  P  +LSH++T+L
Sbjct: 320 EVAPIEVQPARVLSHLYTYL 339


>AE014298-1273|AAF46443.4| 1247|Drosophila melanogaster CG7766-PA,
           isoform A protein.
          Length = 1247

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 203 EVTPLESFPTEILSHIFTFL 262
           EV P+E  P  +LSH++T+L
Sbjct: 467 EVAPIEVQPARVLSHLYTYL 486


>AE014298-1272|AAO41642.2| 1248|Drosophila melanogaster CG7766-PB,
           isoform B protein.
          Length = 1248

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 203 EVTPLESFPTEILSHIFTFL 262
           EV P+E  P  +LSH++T+L
Sbjct: 467 EVAPIEVQPARVLSHLYTYL 486


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,232,088
Number of Sequences: 53049
Number of extensions: 619721
Number of successful extensions: 1771
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1771
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)