Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11a08
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical pr... 42 6e-04
U64849-1|AAC48052.3| 936|Caenorhabditis elegans Daf-12, redunda... 40 0.002
U29613-3|AAC47062.2| 483|Caenorhabditis elegans Hypothetical pr... 33 0.27
U13072-6|AAK31399.1| 327|Caenorhabditis elegans Hypothetical pr... 32 0.36
AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical ... 31 0.63
AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical ... 31 0.63
AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical ... 31 0.63
U55365-11|AAA98576.2| 357|Caenorhabditis elegans Hypothetical p... 31 0.83
AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical ... 31 0.83
AC090999-7|AAK26142.1| 438|Caenorhabditis elegans Hypothetical ... 31 1.1
AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical ... 31 1.1
U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic... 30 1.5
AC087081-15|AAK66031.1| 267|Caenorhabditis elegans Hypothetical... 30 1.5
L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical pr... 29 2.5
L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z74026-2|CAD54122.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z69794-2|CAA93681.1| 786|Caenorhabditis elegans Hypothetical pr... 29 4.4
AC006713-2|AAK68406.1| 310|Caenorhabditis elegans Hypothetical ... 28 5.9
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 28 7.8
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti... 28 7.8
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform... 28 7.8
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform... 28 7.8
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo... 28 7.8
AC087081-11|AAK66034.2| 328|Caenorhabditis elegans Hypothetical... 28 7.8
>Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical
protein T01E8.4 protein.
Length = 406
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 209 TPLESFPTEILSHIFTFLPAKQL-TKCREVCIRWKNVIDTLNKYHSLWYKFCEKDFKNVY 385
T L S P+E+L H+FT+LP +QL T+ VC R+ +++ +K+ S + +K
Sbjct: 7 TELISLPSELLCHLFTYLPQRQLITEIPLVCRRFNTILND-DKFWSRRIRTEQKVRLPDC 65
Query: 386 KFAHRLSRPQITWHELYRSLTLWR 457
+ H P+ +++ ++R WR
Sbjct: 66 ELKHPEYEPKKSFYAMHRQRDRWR 89
>U64849-1|AAC48052.3| 936|Caenorhabditis elegans Daf-12, redundant
with protein 1 protein.
Length = 936
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/89 (26%), Positives = 41/89 (46%)
Frame = +2
Query: 191 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCEKD 370
+ ED+ + P E+L +F+FLP K L C V R+ + ++ H +W +
Sbjct: 154 EEEDQQDHINRLPEELLLKVFSFLPDKSLLACSSVSYRFNQISNS----HEVWKEL---- 205
Query: 371 FKNVYKFAHRLSRPQITWHELYRSLTLWR 457
+ N+Y + L P E +R + WR
Sbjct: 206 YCNLYDYRIPLFHPSHAKFE-FREQSRWR 233
>U29613-3|AAC47062.2| 483|Caenorhabditis elegans Hypothetical
protein K02A6.3a protein.
Length = 483
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 218 ESFPTEILSHIFTFLPAKQLTKCREVCIRWK 310
++ P E+L IF LP K +C +VC +W+
Sbjct: 8 KTMPIELLEDIFQRLPVKNKGRCSQVCRQWQ 38
>U13072-6|AAK31399.1| 327|Caenorhabditis elegans Hypothetical
protein C07D10.1 protein.
Length = 327
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 248 IFTFLPAKQLTKCREVCIRWKNVIDTLNKYHS 343
+F + A L +CR VC +W + I LN+Y S
Sbjct: 16 VFKSVDAATLQRCRRVCTKWNSEILRLNEYTS 47
>AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical
protein T28B4.1a protein.
Length = 535
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 215 LESFPTEILSHIFTFLPAKQLTKCREVCIRWK 310
+E P ++L IF +L KQ+ + VC RW+
Sbjct: 49 IEKLPDKVLRDIFQYLSPKQINQVGLVCKRWR 80
>AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical
protein T28B4.1b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 215 LESFPTEILSHIFTFLPAKQLTKCREVCIRWK 310
+E P ++L IF +L KQ+ + VC RW+
Sbjct: 32 IEKLPDKVLRDIFQYLSPKQINQVGLVCKRWR 63
>AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical
protein T28B4.1c protein.
Length = 552
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 215 LESFPTEILSHIFTFLPAKQLTKCREVCIRWK 310
+E P ++L IF +L KQ+ + VC RW+
Sbjct: 66 IEKLPDKVLRDIFQYLSPKQINQVGLVCKRWR 97
>U55365-11|AAA98576.2| 357|Caenorhabditis elegans Hypothetical
protein C12D5.10 protein.
Length = 357
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 421 SDLRTGEPVSEFVNVFKVLFAKLIP 347
++LR EPVS+F F LFAKL+P
Sbjct: 193 NELRCNEPVSQFSLQFVTLFAKLMP 217
>AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical
protein C39B5.7 protein.
Length = 291
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 227 PTEILSHIFTFLPAKQLTKCREVCIRWKNVID-TLNKYHSLWYKFCEKDF 373
P EI I + LPA L CR+VC ++ +D + N + + + C DF
Sbjct: 2 PLEISDEILSKLPAMDLLSCRKVCKSLRSAVDQSGNHLNRISFDIC-NDF 50
>AC090999-7|AAK26142.1| 438|Caenorhabditis elegans Hypothetical
protein Y82E9BR.12 protein.
Length = 438
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 215 LESFPTEILSHIFTFLPAKQLTKCREVC 298
L PTEIL+ +F L K CR+VC
Sbjct: 105 LSDMPTEILNQVFEKLEPKDRLACRKVC 132
>AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical
protein Y54F10BM.10 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 185 MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVC 298
MSD T L+ P EI + +F L K+L CR+VC
Sbjct: 1 MSDKRVSPTLLD-LPLEIANKVFEELTLKELLNCRKVC 37
>U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic
protein protein 1 protein.
Length = 332
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 227 PTEILSHIFTFLPAKQLTKCREVCIRWKNVI 319
P ++L+ IF +LP K L C W N +
Sbjct: 86 PLKVLNQIFQYLPLKDLRSAMLTCHSWNNAL 116
>AC087081-15|AAK66031.1| 267|Caenorhabditis elegans Hypothetical
protein Y82E9BL.4 protein.
Length = 267
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 209 TPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKY 337
+PL + P +I++ +F L L CR VC + +D Y
Sbjct: 24 SPLLNMPLDIVNQVFEKLSPMDLWTCRNVCQSLRRAVDGFGIY 66
>L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical
protein C02F5.7a protein.
Length = 461
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 227 PTEILSHIFTFLPAKQLTKCREVCIRW 307
P E+L +F+FL K L + +VC W
Sbjct: 61 PKEVLLKVFSFLDTKALCRSAQVCRSW 87
>L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical
protein C02F5.7b protein.
Length = 466
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 227 PTEILSHIFTFLPAKQLTKCREVCIRW 307
P E+L +F+FL K L + +VC W
Sbjct: 61 PKEVLLKVFSFLDTKALCRSAQVCRSW 87
>Z74026-2|CAD54122.1| 588|Caenorhabditis elegans Hypothetical
protein B0240.4 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 279 VNCFAGRKVKMCDNISVGNDSKGVTSSSLSDIFTIMCATV 160
+N +A + M S+G D GV L D+ T++C +
Sbjct: 483 MNAYAAEALYMLVVDSMGEDRFGVVQKDLKDLITLLCKLI 522
>Z69794-2|CAA93681.1| 786|Caenorhabditis elegans Hypothetical
protein R03G8.4 protein.
Length = 786
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 161 TVAHIIVKMSDNEDEVTPLESFPTEILSHIFTFLP 265
T ++ + +D+ + P FPTE HI TFLP
Sbjct: 16 TDLQVVTQETDDTNYRLPRNVFPTEYRLHITTFLP 50
>AC006713-2|AAK68406.1| 310|Caenorhabditis elegans Hypothetical
protein Y119D3A.3 protein.
Length = 310
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 215 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKY 337
L P + +H+ L ++L CR+VC + +D L +
Sbjct: 8 LLDLPITVANHVLEKLEIEELLTCRKVCRTLRTAVDKLGAH 48
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 311 SSSGCKLPGISSTVSLVEK*KCAIIFRWET 222
SS G G SS ++LV+ +CA+I+ W T
Sbjct: 579 SSYGIIAIGTSSGLALVDTTQCALIYSWTT 608
>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform a protein.
Length = 1124
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 311 SSSGCKLPGISSTVSLVEK*KCAIIFRWET 222
SS G G SS ++LV+ +CA+I+ W T
Sbjct: 614 SSYGIIAIGTSSGLALVDTTQCALIYSWTT 643
>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
protein.
Length = 1133
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 311 SSSGCKLPGISSTVSLVEK*KCAIIFRWET 222
SS G G SS ++LV+ +CA+I+ W T
Sbjct: 614 SSYGIIAIGTSSGLALVDTTQCALIYSWTT 643
>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
protein.
Length = 1128
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 311 SSSGCKLPGISSTVSLVEK*KCAIIFRWET 222
SS G G SS ++LV+ +CA+I+ W T
Sbjct: 614 SSYGIIAIGTSSGLALVDTTQCALIYSWTT 643
>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
A protein.
Length = 1124
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 311 SSSGCKLPGISSTVSLVEK*KCAIIFRWET 222
SS G G SS ++LV+ +CA+I+ W T
Sbjct: 614 SSYGIIAIGTSSGLALVDTTQCALIYSWTT 643
>AC087081-11|AAK66034.2| 328|Caenorhabditis elegans Hypothetical
protein Y82E9BL.7 protein.
Length = 328
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 194 NEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVID 322
N + +PL S P ++ + + L L CR VC + +D
Sbjct: 22 NLQQESPLLSIPLDVANQVLEKLEPMDLWTCRNVCQGLRRAVD 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,878
Number of Sequences: 27780
Number of extensions: 329239
Number of successful extensions: 1057
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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