Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11a08
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.7  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.9  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 315 TFFQRMQTSRHFVNCFAGRKVKMCD 241
           TFF+    +     C+ GR  K+C+
Sbjct: 252 TFFESCGVADLIATCYGGRNRKICE 276


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 518 EIQG-FRYLRNGTAGVHTKAGVVYYDLDTLQR 610
           EI G F     GT G HT+A    YD+   +R
Sbjct: 298 EIAGKFNLQVRGTRGEHTEAEGGIYDISNKRR 329


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 587 YDLDTLQRSKRAVIYGDYNR 646
           YD D  +R + A+  G+Y+R
Sbjct: 47  YDFDNDERRQAAIQSGEYDR 66


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 560 VHTKAGVVYYDLDTLQR 610
           V T AG+V Y  DT++R
Sbjct: 222 VTTVAGIVSYPFDTVRR 238


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 560 VHTKAGVVYYDLDTLQR 610
           V T AG+V Y  DT++R
Sbjct: 222 VTTVAGIVSYPFDTVRR 238


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = -3

Query: 538 ISEALDFAGHRGC*REFVVVLSSEVQLPPQSQRPVELVPSDLRTGEPVSEFVNVFKVL 365
           + EA   A   G   E  VVL+  +   P+S+  V+     LR  E +     + K +
Sbjct: 52  LEEARQRANDAGLTEE-EVVLAKTIAECPESENTVQKAALVLRLREGIGSLARILKTI 108


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 496 REFVVVLSSEVQLPPQSQRPVELVPS 419
           RE+ + +  +  L P S  PV  VPS
Sbjct: 423 REYGIRVERDPILTPPSSNPVSPVPS 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,227
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)