Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11a06
(376 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VIZ0 Cluster: Probable DNA-directed RNA polymerases I... 136 2e-31
UniRef50_UPI0000D55E69 Cluster: PREDICTED: similar to CG10685-PA... 116 2e-25
UniRef50_Q6DRI4 Cluster: DNA-directed RNA polymerases I and III ... 98 4e-20
UniRef50_Q22RW2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 97 9e-20
UniRef50_UPI0000E4658A Cluster: PREDICTED: similar to LOC494863 ... 96 2e-19
UniRef50_A5K177 Cluster: RNA polymerase small subunit, putative;... 94 7e-19
UniRef50_UPI0000DB7285 Cluster: PREDICTED: similar to CG10685-PA... 94 9e-19
UniRef50_Q9Y2S0 Cluster: DNA-directed RNA polymerases I and III ... 94 9e-19
UniRef50_Q09177 Cluster: DNA-directed RNA polymerases I and III ... 91 5e-18
UniRef50_Q7RYP4 Cluster: Putative uncharacterized protein NCU004... 90 1e-17
UniRef50_A6RF11 Cluster: Predicted protein; n=1; Ajellomyces cap... 88 6e-17
UniRef50_Q2QWI0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 83 1e-15
UniRef50_P28000 Cluster: DNA-directed RNA polymerases I and III ... 82 4e-15
UniRef50_A0E1A2 Cluster: Chromosome undetermined scaffold_73, wh... 80 2e-14
UniRef50_Q4N286 Cluster: RNA polymerase small subunit, putative;... 78 5e-14
UniRef50_Q5KMK6 Cluster: DNA-directed RNA polymerase, putative; ... 78 6e-14
UniRef50_P34476 Cluster: Probable DNA-directed RNA polymerases I... 76 2e-13
UniRef50_A2DKG2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 74 7e-13
UniRef50_Q54ES6 Cluster: Putative RNA polymerase III subunit; n=... 74 1e-12
UniRef50_Q4PFC9 Cluster: Putative uncharacterized protein; n=1; ... 69 2e-11
UniRef50_A6S183 Cluster: Putative uncharacterized protein; n=2; ... 67 9e-11
UniRef50_A7AT13 Cluster: RNA polymerase small subunit protein, p... 67 1e-10
UniRef50_Q4Q860 Cluster: DNA-directed RNA polymerase-like protei... 64 1e-09
UniRef50_Q01D46 Cluster: Trithorax-like; n=3; Ostreococcus|Rep: ... 62 2e-09
UniRef50_Q42483 Cluster: Arabidopsis thaliana RNA polymerase I(A... 60 2e-08
UniRef50_Q4N0T0 Cluster: DNA-directed RNA polymerase II, putativ... 58 4e-08
UniRef50_UPI0000499BD5 Cluster: RNA polymerases II subunit; n=1;... 58 7e-08
UniRef50_A3FPR0 Cluster: RNA polymerase II, putative; n=1; Crypt... 56 2e-07
UniRef50_Q7R4U8 Cluster: GLP_440_20098_20403; n=1; Giardia lambl... 55 4e-07
UniRef50_Q5KMB4 Cluster: DNA-directed RNA polymerase ii 13.3 kDa... 54 6e-07
UniRef50_Q4PC39 Cluster: Putative uncharacterized protein; n=1; ... 54 6e-07
UniRef50_Q38859 Cluster: DNA-directed RNA polymerase II subunit ... 54 1e-06
UniRef50_Q0ITT7 Cluster: Os11g0218100 protein; n=4; Oryza sativa... 53 2e-06
UniRef50_Q54ZA7 Cluster: RNA polymerase II core subunit; n=2; Di... 49 2e-05
UniRef50_Q59FR2 Cluster: MGC13098 protein variant; n=8; Deuteros... 47 1e-04
UniRef50_A4S056 Cluster: Predicted protein; n=2; Ostreococcus|Re... 47 1e-04
UniRef50_Q7PVQ9 Cluster: DNA-directed RNA polymerase II subunit ... 45 5e-04
UniRef50_A4I2U7 Cluster: DNA-directed RNA polymerase II-like pro... 44 0.001
UniRef50_A2DQ63 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 44 0.001
UniRef50_Q98SC4 Cluster: DNA-DIRECTED RNA POLYMERASES I AND III ... 42 0.004
UniRef50_Q8SQY2 Cluster: DNA-DIRECTED RNA POLYMERASE I AND III S... 42 0.005
UniRef50_Q0UWS5 Cluster: Putative uncharacterized protein; n=1; ... 41 0.009
UniRef50_Q65184 Cluster: RNA polymerase subunit 3; n=2; African ... 40 0.015
UniRef50_Q57832 Cluster: DNA-directed RNA polymerase subunit L; ... 39 0.026
UniRef50_A7AN34 Cluster: Putative uncharacterized protein; n=1; ... 39 0.034
UniRef50_P38902 Cluster: DNA-directed RNA polymerase II subunit ... 39 0.034
UniRef50_P87123 Cluster: DNA-directed RNA polymerase II subunit ... 39 0.034
UniRef50_A4R2Q3 Cluster: Putative uncharacterized protein; n=2; ... 38 0.045
UniRef50_Q98SA6 Cluster: Dna directed RNA polymerase II 13.6 kDa... 38 0.079
UniRef50_Q96YA7 Cluster: DNA-directed RNA polymerase subunit L; ... 38 0.079
UniRef50_Q8TSS4 Cluster: DNA-directed RNA polymerase subunit L; ... 37 0.10
UniRef50_UPI00004997FF Cluster: RNA polymerases II subunit; n=1;... 37 0.14
UniRef50_Q4TAN1 Cluster: Chromosome undetermined SCAF7283, whole... 37 0.14
UniRef50_Q4XS21 Cluster: Probable DNA-directed RNA polymerase II... 37 0.14
UniRef50_O30032 Cluster: DNA-directed RNA polymerase subunit L; ... 36 0.32
UniRef50_A5UMY3 Cluster: DNA-directed RNA polymerase, subunit L,... 35 0.42
UniRef50_Q8ZW46 Cluster: DNA-directed RNA polymerase subunit L; ... 35 0.56
UniRef50_Q74MN9 Cluster: DNA-directed RNA polymerase subunit L; ... 35 0.56
UniRef50_O27372 Cluster: DNA-directed RNA polymerase subunit L; ... 35 0.56
UniRef50_Q2NE51 Cluster: RpoL; n=1; Methanosphaera stadtmanae DS... 33 1.3
UniRef50_A0B533 Cluster: RNA polymerase, dimerisation; n=1; Meth... 33 1.3
UniRef50_Q3ZZ47 Cluster: Putative reductive dehalogenase; n=1; D... 33 1.7
UniRef50_A0BUX3 Cluster: Chromosome undetermined scaffold_13, wh... 33 1.7
UniRef50_A5BP69 Cluster: Putative uncharacterized protein; n=1; ... 33 2.3
UniRef50_Q7R0U9 Cluster: GLP_186_18224_18619; n=2; Giardia intes... 33 2.3
UniRef50_UPI0000F20225 Cluster: PREDICTED: similar to A kinase (... 32 3.9
UniRef50_UPI000058458B Cluster: PREDICTED: similar to dymeclin; ... 32 3.9
UniRef50_Q8LDP3 Cluster: IPP transferase-like protein; n=8; Magn... 31 5.2
UniRef50_A7S3G5 Cluster: Predicted protein; n=1; Nematostella ve... 31 5.2
UniRef50_Q9C256 Cluster: Related to DNA-directed RNA polymerase ... 31 5.2
UniRef50_A1RX43 Cluster: Transcriptional regulator, Fis family; ... 31 5.2
UniRef50_Q1DX71 Cluster: Predicted protein; n=1; Coccidioides im... 31 6.9
UniRef50_Q9C9Y4 Cluster: F-box protein At3g08750; n=3; Arabidops... 31 6.9
UniRef50_Q23JW5 Cluster: Hypothetical repeat containing protein;... 31 9.1
UniRef50_Q5UQD9 Cluster: Putative DNA directed RNA polymerase su... 31 9.1
>UniRef50_Q9VIZ0 Cluster: Probable DNA-directed RNA polymerases I
and III subunit RPAC2; n=5; Diptera|Rep: Probable
DNA-directed RNA polymerases I and III subunit RPAC2 -
Drosophila melanogaster (Fruit fly)
Length = 105
Score = 136 bits (328), Expect = 2e-31
Identities = 57/96 (59%), Positives = 76/96 (79%)
Frame = +2
Query: 65 ISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ 244
++EL GD+ +G RT+VF NE HTLGN+LK II +Y +V+FCGYT+PHP E K+HFRIQ
Sbjct: 4 LAELAGDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ 63
Query: 245 ARETPALEVLKRGLKDLEMVCDHTINLFDKEVKRFN 352
+R A+++LKRGL+DLE +CDHTI F+KE+ FN
Sbjct: 64 SRRDRAIDILKRGLEDLEGLCDHTIVTFEKEMAEFN 99
>UniRef50_UPI0000D55E69 Cluster: PREDICTED: similar to CG10685-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG10685-PA - Tribolium castaneum
Length = 105
Score = 116 bits (278), Expect = 2e-25
Identities = 49/98 (50%), Positives = 69/98 (70%)
Frame = +2
Query: 59 MNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFR 238
M I++L G D+ +CRT++ + E HTLGN+L+C+I+ Y DVEFC YTVPHP E MH R
Sbjct: 1 MPITQLLGTKDTDESCRTFILQGEGHTLGNALRCVISGYPDVEFCAYTVPHPMECSMHLR 60
Query: 239 IQARETPALEVLKRGLKDLEMVCDHTINLFDKEVKRFN 352
IQ R A++ LKRGL+DL + DH ++ F +E + F+
Sbjct: 61 IQMRSGRAVDALKRGLEDLAALSDHILDEFTREKQNFD 98
>UniRef50_Q6DRI4 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=6; Euteleostomi|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 112
Score = 98.3 bits (234), Expect = 4e-20
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Frame = +2
Query: 71 ELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQAR 250
E+ D + C T+V E HTLGNSL+ +I K DVEFCGY++ HP+ESK++FRIQ R
Sbjct: 11 EMVRTDGADEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTR 70
Query: 251 E-TPALEVLKRGLKDLEMVCDHTINLFDKEVKRFNK 355
+ PA E L+ GL +L VC H + F+ +K F +
Sbjct: 71 DGVPASEPLRNGLNNLTDVCKHVLQTFEARMKEFKE 106
>UniRef50_Q22RW2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Tetrahymena thermophila SB210
Length = 150
Score = 97.1 bits (231), Expect = 9e-20
Identities = 44/92 (47%), Positives = 61/92 (66%)
Frame = +2
Query: 101 TCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKR 280
TC TY F +E HTLGN+++ ++ K DVEFCGYT+PHP+E+KM+ R+Q + + EVLK
Sbjct: 59 TCATYTFYDEDHTLGNTVRYMLVKRKDVEFCGYTIPHPSENKMNLRLQTIKKNSNEVLKE 118
Query: 281 GLKDLEMVCDHTINLFDKEVKRFNKV*NAKKK 376
GL L +CD + FD +K+F K K K
Sbjct: 119 GLDSLAGLCDVLNDKFDAAMKKFEKQQKKKSK 150
>UniRef50_UPI0000E4658A Cluster: PREDICTED: similar to LOC494863
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to LOC494863 protein -
Strongylocentrotus purpuratus
Length = 117
Score = 96.3 bits (229), Expect = 2e-19
Identities = 40/84 (47%), Positives = 58/84 (69%)
Frame = +2
Query: 104 CRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRG 283
C T+V NE HTLGN+L+ ++ K DVEFCGY+VPHP E++++FRIQ + PA +V +G
Sbjct: 29 CVTFVMHNEDHTLGNALRYMVMKDPDVEFCGYSVPHPTENRINFRIQTKGAPAGDVFGKG 88
Query: 284 LKDLEMVCDHTINLFDKEVKRFNK 355
L +L VCDH F +++F +
Sbjct: 89 LANLSEVCDHIQQTFKDTIQKFKE 112
>UniRef50_A5K177 Cluster: RNA polymerase small subunit, putative;
n=5; Plasmodium|Rep: RNA polymerase small subunit,
putative - Plasmodium vivax
Length = 97
Score = 94.3 bits (224), Expect = 7e-19
Identities = 41/82 (50%), Positives = 55/82 (67%)
Frame = +2
Query: 101 TCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKR 280
T T+ F NE HTLGN L+CI+ + + VEF GYTVPHP +++++ RIQ PA+ +LK
Sbjct: 14 THATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTGEPAINILKD 73
Query: 281 GLKDLEMVCDHTINLFDKEVKR 346
L DL +CD +N FD VKR
Sbjct: 74 SLDDLSNICDIMLNKFDSVVKR 95
>UniRef50_UPI0000DB7285 Cluster: PREDICTED: similar to CG10685-PA;
n=2; Apocrita|Rep: PREDICTED: similar to CG10685-PA -
Apis mellifera
Length = 108
Score = 93.9 bits (223), Expect = 9e-19
Identities = 39/88 (44%), Positives = 59/88 (67%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPAL 265
+ S C+T+VF E +TLGNSL +I++ +VEFC V HPAE ++ RIQA+ A+
Sbjct: 10 EQSSEKCKTFVFMGEGYTLGNSLVSVISQNPNVEFCACFVNHPAEGNIYLRIQAKRGKAI 69
Query: 266 EVLKRGLKDLEMVCDHTINLFDKEVKRF 349
++LK+GL+D E +CDHT+ F+ +F
Sbjct: 70 DILKKGLEDFEKICDHTLESFNNAYDQF 97
>UniRef50_Q9Y2S0 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=13; Eumetazoa|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 - Homo sapiens
(Human)
Length = 133
Score = 93.9 bits (223), Expect = 9e-19
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Frame = +2
Query: 32 QTVIVKSNRMNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPH 211
+T + + R E+ + C T+V E HTLGNSL+ +I K +VEFCGYT H
Sbjct: 15 KTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTH 74
Query: 212 PAESKMHFRIQARET-PALEVLKRGLKDLEMVCDHTINLFDKEVKRF 349
P+ESK++ RIQ R T PA+E +RGL +L VC H ++ F+ +K +
Sbjct: 75 PSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDY 121
>UniRef50_Q09177 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=5; Ascomycota|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 -
Schizosaccharomyces pombe (Fission yeast)
Length = 125
Score = 91.5 bits (217), Expect = 5e-18
Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Frame = +2
Query: 35 TVIVKSNRMNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHP 214
+V ++S I LPG + T T+ + E HTLGNSL+ +I K +VEFCGY++PHP
Sbjct: 12 SVAMESATEKIIILPGHS-ADLTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHP 70
Query: 215 AESKMHFRIQ-ARETPALEVLKRGLKDLEMVCDHTINLFDKEVKR 346
+E+KM+FRIQ A T A++VL++GL DL +CD F +++ R
Sbjct: 71 SEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLCDAVTEKFTEQLPR 115
>UniRef50_Q7RYP4 Cluster: Putative uncharacterized protein
NCU00419.1; n=3; Sordariomycetes|Rep: Putative
uncharacterized protein NCU00419.1 - Neurospora crassa
Length = 156
Score = 89.8 bits (213), Expect = 1e-17
Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Frame = +2
Query: 74 LPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARE 253
LPG S PT ++ F +E+HTLGN+L+ +I K DVEFC Y +PHP+E+KM+ RIQ E
Sbjct: 58 LPG---STPTAASFEFLDENHTLGNALRYVIMKNPDVEFCAYAIPHPSEAKMNVRIQTYE 114
Query: 254 -TPALEVLKRGLKDLEMVCDHTINLFDKEVKRF 349
T A+E L++GL+D++ +CD + F + K F
Sbjct: 115 GTTAVEALRKGLRDIQDLCDVVSDKFLEARKDF 147
>UniRef50_A6RF11 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 137
Score = 87.8 bits (208), Expect = 6e-17
Identities = 43/107 (40%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Frame = +2
Query: 41 IVKSNRMNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAE 220
+++ + + IS LPG ++ T ++ F E HTLGN+L+ +I K +VEFCGYT+PHP+E
Sbjct: 31 MIELDGLRISILPGAEE---TAASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSE 87
Query: 221 SKMHFRIQARETP-ALEVLKRGLKDLEMVCDHTINLFDKEVKRFNKV 358
+KM+ RIQ +T VL++GL DL +CD F + F ++
Sbjct: 88 AKMNLRIQTFDTTNVFSVLEKGLDDLMNLCDTVTETFIEAKNAFGEI 134
>UniRef50_Q2QWI0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein, expressed; n=2;
Magnoliophyta|Rep: RNA polymerase Rpb3/Rpb11
dimerisation domain containing protein, expressed -
Oryza sativa subsp. japonica (Rice)
Length = 108
Score = 83.4 bits (197), Expect = 1e-15
Identities = 35/85 (41%), Positives = 54/85 (63%)
Frame = +2
Query: 101 TCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKR 280
T T+ E HTL NS++ ++N+ V FCGY++PHPA++K++ R+Q PA +VLK
Sbjct: 10 TASTFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTGDPAKDVLKD 69
Query: 281 GLKDLEMVCDHTINLFDKEVKRFNK 355
L+DL ++C H FD V +F +
Sbjct: 70 SLQDLMVMCQHVRGTFDTAVTQFRQ 94
>UniRef50_P28000 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=18; Ascomycota|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 142
Score = 81.8 bits (193), Expect = 4e-15
Identities = 37/82 (45%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = +2
Query: 101 TCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQA-RETPALEVLK 277
T ++ E HTLGN+L+ +I K DVEFCGY++PHP+E+ ++ RIQ ET A++ L+
Sbjct: 59 TSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQ 118
Query: 278 RGLKDLEMVCDHTINLFDKEVK 343
+GLKDL +CD + F +++K
Sbjct: 119 KGLKDLMDLCDVVESKFTEKIK 140
>UniRef50_A0E1A2 Cluster: Chromosome undetermined scaffold_73, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_73,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 79.8 bits (188), Expect = 2e-14
Identities = 36/86 (41%), Positives = 55/86 (63%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPAL 265
+ S P T+VF +E HTLGNSL+ I+ +VEFCGY++PHP+E+KM+ R+Q
Sbjct: 35 EHSDPFNGTFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENKMNMRLQTVNETKE 94
Query: 266 EVLKRGLKDLEMVCDHTINLFDKEVK 343
+++ GLK L +CD + F K ++
Sbjct: 95 KIMNDGLKCLSQICDIIEDKFKKALE 120
>UniRef50_Q4N286 Cluster: RNA polymerase small subunit, putative;
n=2; Theileria|Rep: RNA polymerase small subunit,
putative - Theileria parva
Length = 92
Score = 78.2 bits (184), Expect = 5e-14
Identities = 35/78 (44%), Positives = 49/78 (62%)
Frame = +2
Query: 110 TYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLK 289
T+ NE HTLGN+L+ ++ + DDV F GY+VPHP E +M+ RIQ PA+EV L
Sbjct: 12 TFCIENEDHTLGNTLRALLVERDDVVFAGYSVPHPMEPEMNVRIQTTGQPAVEVFLDCLD 71
Query: 290 DLEMVCDHTINLFDKEVK 343
D+ +CD F+K +K
Sbjct: 72 DMVKICDILTEKFEKAMK 89
>UniRef50_Q5KMK6 Cluster: DNA-directed RNA polymerase, putative;
n=1; Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 155
Score = 77.8 bits (183), Expect = 6e-14
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = +2
Query: 20 NNITQTVIVKSNRMNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGY 199
+ + Q+V + I+ LPG + C T+ E HTLGN+L+ II K +VEFCGY
Sbjct: 12 STLLQSVSSNAVHEKITILPGHEPDYSAC-TFALWQEDHTLGNALRWIIMKDPEVEFCGY 70
Query: 200 TVPHPAESKMHFRIQARET-PALEVLKRGLKDL 295
T PHP+E K+H RIQ E A++ L+R L +L
Sbjct: 71 TAPHPSEPKIHLRIQMYENQSAVDCLRRALSNL 103
>UniRef50_P34476 Cluster: Probable DNA-directed RNA polymerases I
and III subunit RPAC2; n=2; Caenorhabditis|Rep: Probable
DNA-directed RNA polymerases I and III subunit RPAC2 -
Caenorhabditis elegans
Length = 144
Score = 76.2 bits (179), Expect = 2e-13
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +2
Query: 41 IVKSNRMNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAE 220
+ +M I + P + P+ T + E HT+GNS+K I+++ D+VEFCGY VPHP E
Sbjct: 40 VPSKKKMEILD-PKSFEQDPSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLE 98
Query: 221 SKMHFRIQARE-TPALEVLKRGLKDLEMV 304
K+ FR+Q ++ ALEVL + + +E +
Sbjct: 99 DKILFRVQTKDGINALEVLAKAFESVEQI 127
>UniRef50_A2DKG2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 101
Score = 74.1 bits (174), Expect = 7e-13
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPAL 265
DD P+ + +F E++T+GN+L+ I + V FCGYTVPHPAE+K+ R+QA + +
Sbjct: 11 DDEKPSSGSMLFTGETYTMGNALRQTILQNPKVNFCGYTVPHPAETKVALRVQADDDEKI 70
Query: 266 -EVLKRGLKDLEMVCDHTINLFDKEVKRFNK 355
+++ G+ D + C++T FD F K
Sbjct: 71 TDIVLSGISDFKQWCNNTETEFDNAWSAFQK 101
>UniRef50_Q54ES6 Cluster: Putative RNA polymerase III subunit; n=1;
Dictyostelium discoideum AX4|Rep: Putative RNA
polymerase III subunit - Dictyostelium discoideum AX4
Length = 116
Score = 73.7 bits (173), Expect = 1e-12
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +2
Query: 98 PTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARET-PALEVL 274
P C T++F +E HTLGN+L ++ K V+F GY++PHP++++M+ RIQ + A E L
Sbjct: 33 PDCATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQESL 92
Query: 275 KRGLKDLEMVCDHTINLFD 331
+GL D++ + H F+
Sbjct: 93 LQGLTDIKDISRHIFETFN 111
>UniRef50_Q4PFC9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 164
Score = 69.3 bits (162), Expect = 2e-11
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +2
Query: 110 TYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARE-TPALEVLKRGL 286
T+ + E HTLGNSL+ II K VEFCGY+ PHP+E+K+H RIQ + AL+ L+ +
Sbjct: 35 TFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDNASALDALRDAI 94
Query: 287 KDLEMVCDHTINLFDKEVKRFN 352
++L+ + +D+ + N
Sbjct: 95 ENLDQLFAAIGEAYDRSLSAGN 116
>UniRef50_A6S183 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 110
Score = 67.3 bits (157), Expect = 9e-11
Identities = 30/57 (52%), Positives = 39/57 (68%)
Frame = +2
Query: 74 LPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ 244
LPG D + + F+ E HTLGN+L+ II K DVEFCGY++PHP+E M+ RIQ
Sbjct: 54 LPGSSDKAAS---FEFKKEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEELMNIRIQ 107
>UniRef50_A7AT13 Cluster: RNA polymerase small subunit protein,
putative; n=1; Babesia bovis|Rep: RNA polymerase small
subunit protein, putative - Babesia bovis
Length = 96
Score = 66.9 bits (156), Expect = 1e-10
Identities = 30/75 (40%), Positives = 47/75 (62%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPAL 265
D S P T+ NE HTLGN+++ ++ + +DV F GY+VPHP + +++ RIQ PA+
Sbjct: 5 DSSSPNI-TFSIENEDHTLGNAVRTLLVEREDVFFAGYSVPHPMQPEVNIRIQTTGKPAV 63
Query: 266 EVLKRGLKDLEMVCD 310
++ L DL VC+
Sbjct: 64 KIFVECLDDLVEVCN 78
>UniRef50_Q4Q860 Cluster: DNA-directed RNA polymerase-like protein;
n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase-like protein - Leishmania major
Length = 137
Score = 63.7 bits (148), Expect = 1e-09
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = +2
Query: 119 FRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDLE 298
F +E HTLGN L+ ++ + V GY +PHP E KM +QA + A+E + +GL+ L
Sbjct: 52 FSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQASDY-AVEAVAKGLERLA 110
Query: 299 MVCDHTINLFD 331
+CD TI+ FD
Sbjct: 111 EICDDTISSFD 121
>UniRef50_Q01D46 Cluster: Trithorax-like; n=3; Ostreococcus|Rep:
Trithorax-like - Ostreococcus tauri
Length = 2007
Score = 62.5 bits (145), Expect = 2e-09
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Frame = +2
Query: 110 TYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ--ARE-TPALEVLKR 280
T+ E HTLGN+L+ ++N V CGY+ PHP E +++ R+Q RE A ++
Sbjct: 1921 TFTLEGEDHTLGNALRYVLNANPSVTLCGYSAPHPMERRVNVRVQTHGREGATARGAMRD 1980
Query: 281 GLKDLEMVCDHTINLFDK 334
L D+ VCDH ++K
Sbjct: 1981 ALLDVISVCDHVHESYEK 1998
>UniRef50_Q42483 Cluster: Arabidopsis thaliana RNA polymerase I(A)
and III(C) 14 kDa subunit (RNA polymerase I(A) and
III(C) 14 kDa subunit); n=2; Arabidopsis thaliana|Rep:
Arabidopsis thaliana RNA polymerase I(A) and III(C) 14
kDa subunit (RNA polymerase I(A) and III(C) 14 kDa
subunit) - Arabidopsis thaliana (Mouse-ear cress)
Length = 122
Score = 59.7 bits (138), Expect = 2e-08
Identities = 25/80 (31%), Positives = 45/80 (56%)
Frame = +2
Query: 110 TYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLK 289
++ E HTL N+++ ++N+ V YT+PHP+ +++ R+Q PA EV K +
Sbjct: 13 SFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQ 72
Query: 290 DLEMVCDHTINLFDKEVKRF 349
+L + H ++FDK V +
Sbjct: 73 ELMQMNRHVRSVFDKAVAEY 92
>UniRef50_Q4N0T0 Cluster: DNA-directed RNA polymerase II, putative;
n=2; Theileria|Rep: DNA-directed RNA polymerase II,
putative - Theileria parva
Length = 133
Score = 58.4 bits (135), Expect = 4e-08
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPAL 265
D P C T++ E HT G+ ++ ++K D V F GY +PHP E+K+ RI+ +
Sbjct: 31 DTRFPLCGTFIVHLEDHTFGSLIRSKLSKDDRVTFVGYRMPHPLENKLEIRIRTKTDNPF 90
Query: 266 EVLKRGLKDLEMVCDHTINLF 328
V+ + +L H NL+
Sbjct: 91 TVILSAITNLRTNLSHLKNLY 111
>UniRef50_UPI0000499BD5 Cluster: RNA polymerases II subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerases II
subunit - Entamoeba histolytica HM-1:IMSS
Length = 85
Score = 57.6 bits (133), Expect = 7e-08
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Frame = +2
Query: 110 TYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARET---PALEVLKR 280
+Y E HT N L+ +I D + CGY++PHP+++K+ FRIQ +++ +V++
Sbjct: 6 SYTIEGEDHTFANPLRHVIANLPDTDLCGYSIPHPSDTKVVFRIQTQKSSNKTPFDVMED 65
Query: 281 GLKDLEMVCDHTINLFD 331
G K+L D L++
Sbjct: 66 GCKELIRQMDELNELYE 82
>UniRef50_A3FPR0 Cluster: RNA polymerase II, putative; n=1;
Cryptosporidium parvum Iowa II|Rep: RNA polymerase II,
putative - Cryptosporidium parvum Iowa II
Length = 115
Score = 56.4 bits (130), Expect = 2e-07
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 98 PTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARE-TPALEVL 274
P C +++ E HTLGN + + + +V F GY VPHP E + RIQ RE T +
Sbjct: 27 PCCGSFMIMLEDHTLGNLITTQLLRDPNVIFAGYKVPHPLEPLVQIRIQTRENTTPFVAI 86
Query: 275 KRGLKDLEMVCDHTINLFDKEVKRF 349
+ +K ++M +N F ++ +
Sbjct: 87 QNAIKSIQMESQVILNSFKDSMRNY 111
>UniRef50_Q7R4U8 Cluster: GLP_440_20098_20403; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_440_20098_20403 - Giardia lamblia
ATCC 50803
Length = 101
Score = 55.2 bits (127), Expect = 4e-07
Identities = 25/55 (45%), Positives = 34/55 (61%)
Frame = +2
Query: 110 TYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVL 274
T+V NE HTLGN ++ + V F GY+VPHPAE K++ RIQ+ A + L
Sbjct: 7 TFVIVNEDHTLGNCIRYCLTCNPAVSFAGYSVPHPAEPKLNLRIQSDTQSATDCL 61
>UniRef50_Q5KMB4 Cluster: DNA-directed RNA polymerase ii 13.3 kDa
polypeptide, putative; n=1; Filobasidiella
neoformans|Rep: DNA-directed RNA polymerase ii 13.3 kDa
polypeptide, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 162
Score = 54.4 bits (125), Expect = 6e-07
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +2
Query: 83 DDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQA--RET 256
+D P T V R + HTLGN L+ + V F GY VPHP E+ + +IQ R
Sbjct: 23 EDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSN 82
Query: 257 PALEVLKRGLKDLEMVCDHTINLFDKEVK 343
PA E LKR +L H F ++ K
Sbjct: 83 PA-EALKRACHELIRQTVHIKAQFQQQAK 110
>UniRef50_Q4PC39 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 145
Score = 54.4 bits (125), Expect = 6e-07
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 83 DDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ--ARET 256
+D P T+ F E HTLGN L+ + V FCGY VPHP E K+ +IQ T
Sbjct: 24 EDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSLT 83
Query: 257 PALEVLKRGLKDL 295
P + LK+G + L
Sbjct: 84 PT-DALKQGSQKL 95
>UniRef50_Q38859 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=6; Magnoliophyta|Rep: DNA-directed RNA
polymerase II subunit RPB11 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 116
Score = 53.6 bits (123), Expect = 1e-06
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +2
Query: 110 TYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ-ARETPALEVLKRGL 286
++ E HT+GN ++ +++ ++V F GY +PHP + K+ RI ++ ++ + +
Sbjct: 32 SFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAI 91
Query: 287 KDLEMVCDHTINLFDKEVKRFN 352
DL+ D+ N F+ EV +F+
Sbjct: 92 NDLDKELDYLKNQFEAEVAKFS 113
>UniRef50_Q0ITT7 Cluster: Os11g0218100 protein; n=4; Oryza
sativa|Rep: Os11g0218100 protein - Oryza sativa subsp.
japonica (Rice)
Length = 143
Score = 52.8 bits (121), Expect = 2e-06
Identities = 21/50 (42%), Positives = 33/50 (66%)
Frame = +2
Query: 200 TVPHPAESKMHFRIQARETPALEVLKRGLKDLEMVCDHTINLFDKEVKRF 349
++PHPA++K++ R+Q PA++V K GL+DL ++C H FD V F
Sbjct: 80 SIPHPADNKVNIRVQTTGDPAIDVFKDGLQDLIVMCQHVRGTFDNAVVDF 129
>UniRef50_Q54ZA7 Cluster: RNA polymerase II core subunit; n=2;
Dictyostelium discoideum|Rep: RNA polymerase II core
subunit - Dictyostelium discoideum AX4
Length = 120
Score = 49.2 bits (112), Expect = 2e-05
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQA-RETPA 262
D P + E HT+GN ++ + D+ F GY +PHP E ++ RIQ T
Sbjct: 24 DTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNNTNP 83
Query: 263 LEVLKRGLKDLEMVCDHTINLFDKEVKRFNKV 358
LE +++ ++ L N F ++V++ V
Sbjct: 84 LECVQKSMECLSREFTSLENSFIEQVQKKRNV 115
>UniRef50_Q59FR2 Cluster: MGC13098 protein variant; n=8;
Deuterostomia|Rep: MGC13098 protein variant - Homo
sapiens (Human)
Length = 180
Score = 47.2 bits (107), Expect = 1e-04
Identities = 22/53 (41%), Positives = 27/53 (50%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ 244
D P + E HTLGN +K + K V F GY VPHP E K+ R+Q
Sbjct: 45 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 97
>UniRef50_A4S056 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 115
Score = 46.8 bits (106), Expect = 1e-04
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 110 TYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQAR-ETPALEVLKRGL 286
T+V + E HT+GN L+ ++K DV F GY PHP + ++ ++ T ++ L+ +
Sbjct: 32 TFVLQREDHTIGNLLRMELHKNPDVVFAGYKNPHPTDHRIVLKVHTNANTTPVQALRDAV 91
Query: 287 KDLEMVCDHTINLFDKEVKRFNK 355
+L F E+ +
Sbjct: 92 TNLRAEVGDLSQQFADEINALRR 114
>UniRef50_Q7PVQ9 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=6; Coelomata|Rep: DNA-directed RNA polymerase
II subunit RPB11 - Anopheles gambiae (African malaria
mosquito)
Length = 117
Score = 44.8 bits (101), Expect = 5e-04
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 98 PTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ-ARETPALEVL 274
P + E HTLGN ++ + K +V F GY +PHP E K RIQ E E
Sbjct: 28 PNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAF 87
Query: 275 KRGLKDL 295
+ DL
Sbjct: 88 MNAITDL 94
>UniRef50_A4I2U7 Cluster: DNA-directed RNA polymerase II-like
protein; n=6; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II-like protein - Leishmania infantum
Length = 134
Score = 44.0 bits (99), Expect = 0.001
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +2
Query: 113 YVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ--ARETPA-LEVLKRG 283
+ E HTL N L+ +++ V+ GY VPHP + + R+Q + T A + K+
Sbjct: 42 FKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQTASNGTDAPVPAPKKA 101
Query: 284 LKDLEMVCDHTINLFDKEVKR 346
L+D C + +F+++++R
Sbjct: 102 LQDAINGCLKDLEVFEEQLRR 122
>UniRef50_A2DQ63 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 124
Score = 44.0 bits (99), Expect = 0.001
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARET--- 256
++ C T+ + E HTLGN L + + + F GY + HP + + R++A +
Sbjct: 29 EEKSDNCYTFTVQKEDHTLGNLLTDQLLTENRILFAGYRIEHPTKDLIKIRVKASQNVNH 88
Query: 257 ------PALEVLKRGLKDLEMVCDHTINLFDK 334
PA+E LK + L+ + FDK
Sbjct: 89 PKELIDPAIEALKTKIAGLQSSFISSCQSFDK 120
>UniRef50_Q98SC4 Cluster: DNA-DIRECTED RNA POLYMERASES I AND III 16
KD POLYPEPTIDE; n=1; Guillardia theta|Rep: DNA-DIRECTED
RNA POLYMERASES I AND III 16 KD POLYPEPTIDE - Guillardia
theta (Cryptomonas phi)
Length = 107
Score = 41.9 bits (94), Expect = 0.004
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 119 FRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHF 235
F NES+TLGN L+ + ++ CGY +PHP+E+ + F
Sbjct: 19 FYNESNTLGNLLQYFMKFNGLIDVCGYYIPHPSENLLKF 57
>UniRef50_Q8SQY2 Cluster: DNA-DIRECTED RNA POLYMERASE I AND III
SUBUNIT 14K; n=1; Encephalitozoon cuniculi|Rep:
DNA-DIRECTED RNA POLYMERASE I AND III SUBUNIT 14K -
Encephalitozoon cuniculi
Length = 104
Score = 41.5 bits (93), Expect = 0.005
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Frame = +2
Query: 107 RTYVFRNESHTLGNSLKCIINKY---DDVEFCGYTVPHPAESKMHFRIQ----ARETP-- 259
+T R E HT+ N L+ I K + VE GYT+PHP++ + IQ + +TP
Sbjct: 13 QTVQVRKEDHTIMNPLRWCIGKNFTGEKVELVGYTIPHPSDDISNITIQLCDESLQTPPN 72
Query: 260 ALEVLKRGLKDLEMVCDHTINLFDKEVKRFNK 355
L+ L GL+ +E + + ++ FNK
Sbjct: 73 LLKKLVEGLECMEAIGAKIASEIERSKGGFNK 104
>UniRef50_Q0UWS5 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 216
Score = 40.7 bits (91), Expect = 0.009
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +2
Query: 74 LPGDDDSGPTCR------TYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHF 235
LP D + PT + F E HTLGN + + KY + F Y VPHP +
Sbjct: 100 LPSDTQANPTTLGVPNTGIFTFNKEDHTLGNLISQRLLKYPYITFSAYKVPHPLFATFEL 159
Query: 236 RI 241
R+
Sbjct: 160 RV 161
>UniRef50_Q65184 Cluster: RNA polymerase subunit 3; n=2; African
swine fever virus|Rep: RNA polymerase subunit 3 -
African swine fever virus (ASFV)
Length = 359
Score = 39.9 bits (89), Expect = 0.015
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 89 DSGPTCRTYVFRNESHTLGNSLK-CIINKYDDVEFCGY-TVPHPAESKMHFRIQARETPA 262
D T ++E+HT+GN LK CI D+ F GY VPH E + +A +
Sbjct: 273 DEEKTKAIITIKDETHTIGNLLKTCIYEMIPDISFVGYQCVPHKQEMVLTIIHKASQEDL 332
Query: 263 LEVLKRGLKDL 295
+ +L++ ++++
Sbjct: 333 ITLLEKSIQNI 343
>UniRef50_Q57832 Cluster: DNA-directed RNA polymerase subunit L;
n=6; Methanococcales|Rep: DNA-directed RNA polymerase
subunit L - Methanococcus jannaschii
Length = 99
Score = 39.1 bits (87), Expect = 0.026
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Frame = +2
Query: 125 NESHTLGNSLKCIINKYDDVEFCGYTVPHP---AESKMHFR------IQARETPALEVLK 277
NE H+L N LK I+ + V+ Y++ HP E+ + I T LEVLK
Sbjct: 19 NEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEGTDPLEVLK 78
Query: 278 RGLKDLEMVCD 310
GL+D+ +CD
Sbjct: 79 EGLRDIIKMCD 89
>UniRef50_A7AN34 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 92
Score = 38.7 bits (86), Expect = 0.034
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 140 LGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDLEMVCDH 313
LG +K ++K + V F GY +PHP E+K+ R++ + V+ + + + H
Sbjct: 19 LGQGVKKRLSKDERVAFVGYRMPHPLENKLEIRLRCKVDSPFTVMLNAISSVRLNIGH 76
>UniRef50_P38902 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=10; Saccharomycetales|Rep: DNA-directed RNA
polymerase II subunit RPB11 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 120
Score = 38.7 bits (86), Expect = 0.034
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARE 253
D P F E HTLGN ++ + V F Y V HP ++ RIQ E
Sbjct: 24 DTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTE 79
>UniRef50_P87123 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase II subunit RPB11 - Schizosaccharomyces
pombe (Fission yeast)
Length = 123
Score = 38.7 bits (86), Expect = 0.034
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARE 253
D P E HTL N L + + V F GY VPHP R+Q E
Sbjct: 23 DSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVE 78
>UniRef50_A4R2Q3 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 130
Score = 38.3 bits (85), Expect = 0.045
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 113 YVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ 244
+ F+ E HTLGN L + ++ +V GY V HP + RIQ
Sbjct: 33 FTFKKEDHTLGNMLTEHLKQHPNVLMAGYKVSHPNVPEFFLRIQ 76
>UniRef50_Q98SA6 Cluster: Dna directed RNA polymerase II 13.6 kDa
chain; n=1; Guillardia theta|Rep: Dna directed RNA
polymerase II 13.6 kDa chain - Guillardia theta
(Cryptomonas phi)
Length = 108
Score = 37.5 bits (83), Expect = 0.079
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 107 RTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARE--TPALEVLKR 280
+ ++F NE T+G L + + +V FCGY HP ++ + +I+ P LE L+
Sbjct: 30 KEFLFENEDATMGEILVYKLENHKNVLFCGYKKLHPLDNNIFLKIKTNSFTDPVLE-LEW 88
Query: 281 GLKDL 295
+K++
Sbjct: 89 AIKEI 93
>UniRef50_Q96YA7 Cluster: DNA-directed RNA polymerase subunit L;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit L - Sulfolobus tokodaii
Length = 93
Score = 37.5 bits (83), Expect = 0.079
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +2
Query: 128 ESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDLEMVC 307
E HT+GN LK + K V+F Y+ PHP + +I ++ + +K +E+
Sbjct: 20 EEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMT--DGSISPKEALVKAIELAE 77
Query: 308 DHTINLFDKEVKRFNK 355
+ T N F +EVK K
Sbjct: 78 EDT-NKFIEEVKSIEK 92
>UniRef50_Q8TSS4 Cluster: DNA-directed RNA polymerase subunit L;
n=4; Methanosarcinaceae|Rep: DNA-directed RNA polymerase
subunit L - Methanosarcina acetivorans
Length = 92
Score = 37.1 bits (82), Expect = 0.10
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +2
Query: 122 RNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDLEM 301
R E+HTL N LK ++ K + VE Y + H + S I+ T + VLK +
Sbjct: 18 RGETHTLLNLLKDLLIKDERVEAAFYDMKHVSISDPILYIKTDGTDPILVLKETAAIIIA 77
Query: 302 VCDHTINLFDK 334
CD I++F K
Sbjct: 78 QCDEFIDVFSK 88
>UniRef50_UPI00004997FF Cluster: RNA polymerases II subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerases II
subunit - Entamoeba histolytica HM-1:IMSS
Length = 112
Score = 36.7 bits (81), Expect = 0.14
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAE--SKMHFRIQARETP 259
+++G C+ + E HT GN L+ ++ + V F GY PHP +M R TP
Sbjct: 22 EENGHVCK-FTLVKEDHTAGNILRVMLLRNPHVLFAGYRQPHPLNYVIEMTIRTDMTITP 80
Query: 260 ALEVLKRGLKDL 295
+ L++ + D+
Sbjct: 81 K-QALEQAMDDV 91
>UniRef50_Q4TAN1 Cluster: Chromosome undetermined SCAF7283, whole
genome shotgun sequence; n=3; Clupeocephala|Rep:
Chromosome undetermined SCAF7283, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 401
Score = 36.7 bits (81), Expect = 0.14
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -3
Query: 245 LVS*NAFLILLGVERYIHRIQHHHICL-*YILMNSLMYGFHFGRRMFCR*ALNRHHQEAQ 69
+++ FL+L+ + I + HH + L Y+++ +++ F FG C A+NR Q +
Sbjct: 49 VIAVGVFLLLIAIVGLIGALHHHQVMLFFYMVILFIVFLFQFGVSCSCL-AVNRGQQACK 107
Query: 68 KCSFCY 51
K S CY
Sbjct: 108 KQSHCY 113
>UniRef50_Q4XS21 Cluster: Probable DNA-directed RNA polymerase II
subunit RPB11; n=5; Plasmodium|Rep: Probable
DNA-directed RNA polymerase II subunit RPB11 -
Plasmodium chabaudi
Length = 126
Score = 36.7 bits (81), Expect = 0.14
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +2
Query: 104 CRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVL 274
C + + E HT+GN +K + + V F Y PHP ++ + I+ + +++L
Sbjct: 35 CNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNAIEITIRPKGYAGVKLL 91
>UniRef50_O30032 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Archaeoglobus fulgidus|Rep: DNA-directed RNA
polymerase subunit L - Archaeoglobus fulgidus
Length = 86
Score = 35.5 bits (78), Expect = 0.32
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +2
Query: 89 DSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALE 268
D G V + E HT N L+ + + +DV Y +PHP + I+ LE
Sbjct: 7 DIGEDYVRLVIKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKTSGVDPLE 66
Query: 269 VLKRGLKDLEMVCD 310
+KR + + C+
Sbjct: 67 AVKRANEKIIAACN 80
>UniRef50_A5UMY3 Cluster: DNA-directed RNA polymerase, subunit L,
RpoL; n=1; Methanobrevibacter smithii ATCC 35061|Rep:
DNA-directed RNA polymerase, subunit L, RpoL -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 96
Score = 35.1 bits (77), Expect = 0.42
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 113 YVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQA-RETPALEVLKRGLK 289
++ ESH + N+L+ I+ + DVE+ Y + HP + + I+ R +VLK+
Sbjct: 20 FIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAAS 79
Query: 290 DLE 298
L+
Sbjct: 80 QLK 82
>UniRef50_Q8ZW46 Cluster: DNA-directed RNA polymerase subunit L;
n=4; Pyrobaculum|Rep: DNA-directed RNA polymerase
subunit L - Pyrobaculum aerophilum
Length = 92
Score = 34.7 bits (76), Expect = 0.56
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 122 RNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRG----LK 289
+ E++TL + L ++ DVE+ + V HP + +F+++ + LE ++R L
Sbjct: 22 KGETYTLFSPLVEYLSNDPDVEYVQFDVDHPLQENAYFKLKVKRGNPLEAIQRAVNAILS 81
Query: 290 DLE 298
DLE
Sbjct: 82 DLE 84
>UniRef50_Q74MN9 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Nanoarchaeum equitans|Rep: DNA-directed RNA
polymerase subunit L - Nanoarchaeum equitans
Length = 96
Score = 34.7 bits (76), Expect = 0.56
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 119 FRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQA-RETPALEVLKRGLKDL 295
F+ E+HTL N+LK I + V+ Y + HP + +F I+ A + L + LK L
Sbjct: 22 FKGETHTLFNALKEIAYTINGVKKAAYFIEHPLKDNNYFIIETDGSIKARDALIQALKKL 81
Query: 296 E 298
+
Sbjct: 82 K 82
>UniRef50_O27372 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: DNA-directed RNA polymerase subunit L -
Methanobacterium thermoautotrophicum
Length = 85
Score = 34.7 bits (76), Expect = 0.56
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +2
Query: 116 VFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDL 295
VF E+HTL N L+ I+ + + V+ Y++ HP + I+A + LK + L
Sbjct: 14 VFEGETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIRAGSPK--KSLKAAAETL 71
Query: 296 EMVCDHTINLFD 331
CD L +
Sbjct: 72 RDRCDEFRRLIE 83
>UniRef50_Q2NE51 Cluster: RpoL; n=1; Methanosphaera stadtmanae DSM
3091|Rep: RpoL - Methanosphaera stadtmanae (strain DSM
3091)
Length = 88
Score = 33.5 bits (73), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 128 ESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQA 247
ESHT+ N L+ + YD+V+ Y + HP + F I++
Sbjct: 18 ESHTICNILRKRLMDYDEVDAAAYDITHPLIGQPEFEIRS 57
>UniRef50_A0B533 Cluster: RNA polymerase, dimerisation; n=1;
Methanosaeta thermophila PT|Rep: RNA polymerase,
dimerisation - Methanosaeta thermophila (strain DSM 6194
/ PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 91
Score = 33.5 bits (73), Expect = 1.3
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +2
Query: 119 FRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDLE 298
F E HTL N L+ + + + V Y P FR++ R L+V++ +
Sbjct: 17 FEGERHTLLNLLRSELLEDERVVIATYDAKFPIMDNPVFRLKTRGVDPLDVIRDASARIA 76
Query: 299 MVCDHTINLFDKEVK 343
+CD + +++ V+
Sbjct: 77 DLCDEFLREYEEAVR 91
>UniRef50_Q3ZZ47 Cluster: Putative reductive dehalogenase; n=1;
Dehalococcoides sp. CBDB1|Rep: Putative reductive
dehalogenase - Dehalococcoides sp. (strain CBDB1)
Length = 463
Score = 33.1 bits (72), Expect = 1.7
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPA 217
D +GPT R Y +N +++G L C Y+ VE G T+PHPA
Sbjct: 113 DYAGPTTRDYSLKNAMYSVG--LGCPHYLYN-VEQFGVTLPHPA 153
>UniRef50_A0BUX3 Cluster: Chromosome undetermined scaffold_13, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_13,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 129
Score = 33.1 bits (72), Expect = 1.7
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 128 ESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQAR-ETPALEVLKRGLKDL 295
E HT+GN + + K +V F GY HP + + ++Q + +++ +DL
Sbjct: 46 EDHTIGNLTRMNLLKQKEVTFSGYRQIHPLQHTIEIKVQTNGSIKPYDAIQKTFQDL 102
>UniRef50_A5BP69 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 262
Score = 32.7 bits (71), Expect = 2.3
Identities = 22/46 (47%), Positives = 24/46 (52%)
Frame = -3
Query: 311 DHTPFLDLSDLFLELPMQVFLWLVS*NAFLILLGVERYIHRIQHHH 174
D FLDL DLF ELP FL + + L L G E I R HHH
Sbjct: 221 DDDAFLDLPDLFPELP-DPFLDV----SHLELAGTEPIITRFDHHH 261
>UniRef50_Q7R0U9 Cluster: GLP_186_18224_18619; n=2; Giardia
intestinalis|Rep: GLP_186_18224_18619 - Giardia lamblia
ATCC 50803
Length = 131
Score = 32.7 bits (71), Expect = 2.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 128 ESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ 244
+ +T+G+ L+ + V F G PHP ESK+ R+Q
Sbjct: 39 QDYTIGHILRKELLSMPQVTFAGMKTPHPLESKIVIRLQ 77
>UniRef50_UPI0000F20225 Cluster: PREDICTED: similar to A kinase
(PRKA) anchor protein 6,; n=4; Danio rerio|Rep:
PREDICTED: similar to A kinase (PRKA) anchor protein 6,
- Danio rerio
Length = 1394
Score = 31.9 bits (69), Expect = 3.9
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 116 VFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDL 295
V ++ TLGNS C++ + DD++ C T+ P H R + + VL+R K
Sbjct: 486 VSEGDTETLGNSEICLLCQSDDLKVC-VTLTPPIREDSHNRDRVSDEDIDRVLERANKCA 544
Query: 296 E 298
E
Sbjct: 545 E 545
>UniRef50_UPI000058458B Cluster: PREDICTED: similar to dymeclin;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to dymeclin - Strongylocentrotus purpuratus
Length = 689
Score = 31.9 bits (69), Expect = 3.9
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 290 LSDLFLELPMQVFLWLV---S*NAFLILLGVERYIHRIQHHHICL*YIL 153
L L +E+P+ F +++ + N L+LL V+ YI RI H + YI+
Sbjct: 168 LIQLLIEVPVLNFTYVIHLETINTLLVLLSVQMYIPRISHKSLITEYIM 216
>UniRef50_Q8LDP3 Cluster: IPP transferase-like protein; n=8;
Magnoliophyta|Rep: IPP transferase-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 463
Score = 31.5 bits (68), Expect = 5.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 363 FYTLLNLFTSLSNKFMV*SHTISRSFRPLFRTSNAGVSLACILKCIFDS 217
FY LN F + S F T R P++ NA L IL+CI+D+
Sbjct: 347 FYAFLNKFQTASRNFAKRQMTWFRC-EPMYHWLNASKPLDSILQCIYDA 394
>UniRef50_A7S3G5 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1523
Score = 31.5 bits (68), Expect = 5.2
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 206 PHPAESKMHFRIQARETPALEVLKRGLKDLEMVC-DHTINLFDKE 337
PHP+E+ M ++ R PAL+ + +++E VC DH + + +
Sbjct: 1326 PHPSEAFMVWKFPGRGPPALDPCEYNTENMEEVCFDHLKSTYQSD 1370
>UniRef50_Q9C256 Cluster: Related to DNA-directed RNA polymerase
13.3K chain; n=3; Sordariales|Rep: Related to
DNA-directed RNA polymerase 13.3K chain - Neurospora
crassa
Length = 133
Score = 31.5 bits (68), Expect = 5.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 128 ESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ 244
E HTLGN L + + V GY + HP ++ RIQ
Sbjct: 38 EDHTLGNLLAEHLKQAPHVLMAGYKIAHPNVPELFIRIQ 76
>UniRef50_A1RX43 Cluster: Transcriptional regulator, Fis family;
n=1; Thermofilum pendens Hrk 5|Rep: Transcriptional
regulator, Fis family - Thermofilum pendens (strain Hrk
5)
Length = 101
Score = 31.5 bits (68), Expect = 5.2
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 122 RNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQAR-ETPALEVLKRGLKDL 295
R E HTL N L +N+ DVE Y V HP + H ++ + LE ++ ++ L
Sbjct: 29 RGEGHTLLNLLVDELNRIPDVE-ATYRVDHPLLNVAHLLVRTKGSKQPLEAIREAVESL 86
>UniRef50_Q1DX71 Cluster: Predicted protein; n=1; Coccidioides
immitis|Rep: Predicted protein - Coccidioides immitis
Length = 303
Score = 31.1 bits (67), Expect = 6.9
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 59 MNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCG--YTV--PHPAESK 226
M S+L DD+S TYV ++E++T NS + + DD CG Y V H AE
Sbjct: 119 MEDSKLLTDDESATDTNTYVSQSEAYT-ANSSRALSVTDDDNLLCGESYDVMSDHTAELS 177
Query: 227 MH 232
H
Sbjct: 178 YH 179
>UniRef50_Q9C9Y4 Cluster: F-box protein At3g08750; n=3; Arabidopsis
thaliana|Rep: F-box protein At3g08750 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 369
Score = 31.1 bits (67), Expect = 6.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 65 ISELPGDDDSGPTCRTYVFRNES 133
+ LP DDDS P C Y F+++S
Sbjct: 157 LGRLPKDDDSDPNCEIYEFKSDS 179
>UniRef50_Q23JW5 Cluster: Hypothetical repeat containing protein;
n=2; Tetrahymena thermophila SB210|Rep: Hypothetical
repeat containing protein - Tetrahymena thermophila
SB210
Length = 1518
Score = 30.7 bits (66), Expect = 9.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -2
Query: 195 PQNSTSSYLFIIHFNEFPNVWLSFRKTYVLQV 100
PQ+S ++YLF H ++ NV +++K Y+ Q+
Sbjct: 258 PQDSKNNYLFTFHLDD-SNVTSNYKKNYISQI 288
>UniRef50_Q5UQD9 Cluster: Putative DNA directed RNA polymerase
subunit R470; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative DNA directed RNA polymerase subunit R470 -
Mimivirus
Length = 357
Score = 30.7 bits (66), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 86 DDSGPTCRTYV-FRNESHTLGNSLKCIINKYDDVEFCGYTVPH 211
+D PT + + E HTLG L+ ++ + + VE GY +PH
Sbjct: 270 EDRDPTEQIDIELYGEDHTLGTILENVLQQCEYVEKAGYCMPH 312
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 368,138,351
Number of Sequences: 1657284
Number of extensions: 7012932
Number of successful extensions: 18168
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 17690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18159
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14019197511
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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