Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11a06
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    91   4e-20
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    39   3e-04
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    28   0.42 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   2.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.9  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   3.9  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   3.9  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   5.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    24   6.8  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    24   6.8  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    24   6.8  

>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
           I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 91.5 bits (217), Expect = 4e-20
 Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
 Frame = +2

Query: 35  TVIVKSNRMNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHP 214
           +V ++S    I  LPG   +  T  T+  + E HTLGNSL+ +I K  +VEFCGY++PHP
Sbjct: 12  SVAMESATEKIIILPGHS-ADLTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHP 70

Query: 215 AESKMHFRIQ-ARETPALEVLKRGLKDLEMVCDHTINLFDKEVKR 346
           +E+KM+FRIQ A  T A++VL++GL DL  +CD     F +++ R
Sbjct: 71  SEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLCDAVTEKFTEQLPR 115


>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +2

Query: 86  DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARE 253
           D   P         E HTL N L   +   + V F GY VPHP       R+Q  E
Sbjct: 23  DSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVE 78


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 270 TSNAGVSLACILKCIFDSAGCGTVYPQNSTSSYLFIIHFNEFPNVWLSF 124
           T+N G+SL  ++  +F     G  Y  +     +F  HF++F  +W+ F
Sbjct: 3   TANKGLSLVLLIPNLFALVSGGLQYVFD-VRRRIFRPHFSQFWTIWMKF 50


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 362  SILY*IFSLLCQINLWCDHTPFLDLSDLFLELPMQVF 252
            S+L+   S+L   N W    PFL+L+ L L L  ++F
Sbjct: 1039 SLLFHFDSILGYQNYWKKVEPFLNLNSLNLLLKSELF 1075


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -1

Query: 376 FFFCILYFIK-----SFHFFVK*IYGVITHHF*IFQTSF*NFQCRC 254
           FFF +L+F+      SF FF+  I+ V    F I    F  F C C
Sbjct: 119 FFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVC 164


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/66 (19%), Positives = 32/66 (48%)
 Frame = +2

Query: 161 IINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDLEMVCDHTINLFDKEV 340
           ++  ++ ++  GY    P+ S +  RI ARE    E+L+   +++     +T  +  +++
Sbjct: 84  VLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDRVTNTEKMSHEDL 143

Query: 341 KRFNKV 358
               K+
Sbjct: 144 ANLEKI 149


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 65  ISELPGDDDSGPTCRTYVFRNESHTLGNSLKCII 166
           I E  G+D++G   +T  F+   H L     C I
Sbjct: 21  IDEASGNDETGNGSQTSPFKTAIHALETDANCTI 54


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 278 RGLKDLEMVCDHTINLFDKEVKRFNKV 358
           R L+ L   C H IN+  ++ K FN V
Sbjct: 308 RVLEHLLSECSHEINVLSQQSKNFNGV 334


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 203 RYIHRIQHHHICL*YILMNSLMYGFHFGRRMFC 105
           RY+  I H    L Y L+ S  YG +  + + C
Sbjct: 602 RYVDNISHFAQSLLYTLLISDRYGINTNQALLC 634


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 341 SLLCQINLWCDHTPFLD 291
           SL  QIN W D+ P LD
Sbjct: 58  SLNGQINTWTDNNPLLD 74


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 60  ILLLFTITVWVILF*SVP 7
           +L LF +T W ILF  VP
Sbjct: 533 LLTLFALTFWDILFEDVP 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,177
Number of Sequences: 5004
Number of extensions: 32810
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)