Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11a06
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0594 - 4859492-4859640,4860113-4860189,4861825-4861925 83 5e-17
11_01_0733 - 6068930-6068941,6069259-6069365,6069875-6070112 53 8e-08
07_01_0515 - 3846405-3846449,3846804-3846899,3846980-3847058,384... 47 4e-06
12_02_1163 - 26617450-26617550,26617643-26617744,26618606-26618732 29 1.2
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 27 3.6
05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960 27 6.3
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 27 6.3
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621... 26 8.4
>12_01_0594 - 4859492-4859640,4860113-4860189,4861825-4861925
Length = 108
Score = 83.4 bits (197), Expect = 5e-17
Identities = 35/85 (41%), Positives = 54/85 (63%)
Frame = +2
Query: 101 TCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKR 280
T T+ E HTL NS++ ++N+ V FCGY++PHPA++K++ R+Q PA +VLK
Sbjct: 10 TASTFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTGDPAKDVLKD 69
Query: 281 GLKDLEMVCDHTINLFDKEVKRFNK 355
L+DL ++C H FD V +F +
Sbjct: 70 SLQDLMVMCQHVRGTFDTAVTQFRQ 94
>11_01_0733 - 6068930-6068941,6069259-6069365,6069875-6070112
Length = 118
Score = 52.8 bits (121), Expect = 8e-08
Identities = 21/50 (42%), Positives = 33/50 (66%)
Frame = +2
Query: 200 TVPHPAESKMHFRIQARETPALEVLKRGLKDLEMVCDHTINLFDKEVKRF 349
++PHPA++K++ R+Q PA++V K GL+DL ++C H FD V F
Sbjct: 63 SIPHPADNKVNIRVQTTGDPAIDVFKDGLQDLIVMCQHVRGTFDNAVVDF 112
>07_01_0515 -
3846405-3846449,3846804-3846899,3846980-3847058,
3847144-3847233,3847529-3847626
Length = 135
Score = 47.2 bits (107), Expect = 4e-06
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 110 TYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ-ARETPALEVLKRGL 286
++ E HT+GN L+ +++ +V F GY +PHP + K+ R+ A ++ + + +
Sbjct: 47 SFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKILVRVHTANQSTPTQAYTQAI 106
Query: 287 KDLEMVCDHTINLFDKEVKRFNK 355
DL+ ++ F+ E R+ +
Sbjct: 107 NDLDKELENLKQAFEDEKIRYEE 129
>12_02_1163 - 26617450-26617550,26617643-26617744,26618606-26618732
Length = 109
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 14 DQNNITQTVIVKSNRMNISELPGDDDSGPTCRTYVFRNES 133
DQ N V+ S R NI D++ PT T RNE+
Sbjct: 25 DQENDASAVVQPSPRTNIGTEYSDENMSPTIATSEVRNET 64
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 27.5 bits (58), Expect = 3.6
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Frame = +2
Query: 38 VIVKSNRMNISELPGDDDSGPTCRTYVFRNESHT-LGNSLKCIINKYDDVEFCGYTVPHP 214
VI + R ++ L + G + Y R E + L+ I Y ++E GY V
Sbjct: 64 VIEFTGREDVERLLAEKMKGKSKTDYKGRTEQMSEYIKKLRACIRWYIELED-GYLVEQE 122
Query: 215 -------AESKMHFRIQARETPALEVLKRGLKDLEMVCDHTINLFDKE 337
AE+ H +++A+ + LE LK +L CD F+KE
Sbjct: 123 KLRSTMDAENAQHAKLEAQLSSDLEELKAAHLNLTRQCDSLEESFNKE 170
>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
Length = 127
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 95 LNRHHQEAQKCSFCYFLQSLFG*YYFD 15
++RH Q+ SFC FL L G Y D
Sbjct: 33 MDRHSLRLQRPSFCCFLLDLVGYVYAD 59
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 68 SELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVE 187
SE P D+G + + Y + LGN + +I+ ++ +E
Sbjct: 1804 SEDPSPTDNGKSLQDYHVESNEENLGNGIGDVISVHEKIE 1843
>04_01_0476 +
6215401-6217445,6217538-6217630,6218031-6218133,
6218237-6218254
Length = 752
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 236 RIQARETPALEVLKRGLKDLEMVCDHTINLFDKEV 340
R+Q RET L RG+KD + ++LFD V
Sbjct: 60 RLQGRETNIANQL-RGIKDAAYQAEDVLDLFDYRV 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,464,603
Number of Sequences: 37544
Number of extensions: 179495
Number of successful extensions: 404
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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