Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11a06
(376 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22179-12|CAA80165.1| 144|Caenorhabditis elegans Hypothetical p... 76 7e-15
Z81135-2|CAB03455.1| 122|Caenorhabditis elegans Hypothetical pr... 50 7e-07
AF078783-1|AAK82900.1| 382|Caenorhabditis elegans Hypothetical ... 28 2.5
AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical ... 27 3.3
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 27 5.8
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 27 5.8
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 27 5.8
AF067624-5|AAC17564.4| 506|Caenorhabditis elegans Hypothetical ... 27 5.8
AC199172-11|ABO33270.1| 311|Caenorhabditis elegans F-box a prot... 27 5.8
AC199172-4|ABO33272.1| 304|Caenorhabditis elegans F-box a prote... 27 5.8
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 26 7.6
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 26 7.6
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 26 7.6
AF098993-5|AAC67468.1| 325|Caenorhabditis elegans Hypothetical ... 26 7.6
>Z22179-12|CAA80165.1| 144|Caenorhabditis elegans Hypothetical
protein F58A4.9 protein.
Length = 144
Score = 76.2 bits (179), Expect = 7e-15
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +2
Query: 41 IVKSNRMNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAE 220
+ +M I + P + P+ T + E HT+GNS+K I+++ D+VEFCGY VPHP E
Sbjct: 40 VPSKKKMEILD-PKSFEQDPSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLE 98
Query: 221 SKMHFRIQARE-TPALEVLKRGLKDLEMV 304
K+ FR+Q ++ ALEVL + + +E +
Sbjct: 99 DKILFRVQTKDGINALEVLAKAFESVEQI 127
>Z81135-2|CAB03455.1| 122|Caenorhabditis elegans Hypothetical
protein W01G7.3 protein.
Length = 122
Score = 49.6 bits (113), Expect = 7e-07
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 86 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ-ARETPA 262
D P + E HTLGN LK + K +V F GY PHP E K+ RIQ T
Sbjct: 23 DTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTP 82
Query: 263 LEVLKRGLKDL 295
+ L + DL
Sbjct: 83 ADALTTAITDL 93
>AF078783-1|AAK82900.1| 382|Caenorhabditis elegans Hypothetical
protein H10E21.2 protein.
Length = 382
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 183 TSSYLFIIHFNEFPNVWLSFRKTYVLQVXXXXXXXXXXEMFILLLFTITVWVIL 22
T+SY+ +I F NVW+S++ V M IL + + V+L
Sbjct: 14 TTSYITVILFGNIGNVWVSWKVGIVFVFDKSSLVPRNIVMLILFICVADLLVLL 67
>AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical
protein Y54G2A.38 protein.
Length = 520
Score = 27.5 bits (58), Expect = 3.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 258 GVSLACILKCIFDSAGCGTVYPQNSTSSYLFIIHFNEFPNVWLSF 124
G C+L +F S G Y TSS+LF +F F N + +
Sbjct: 67 GTCKDCVLSNLFASLGKDNQY----TSSFLFFCYFLHFGNAYFQY 107
Score = 27.5 bits (58), Expect = 3.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 258 GVSLACILKCIFDSAGCGTVYPQNSTSSYLFIIHFNEFPNVWLSF 124
G C+L +F S G Y TSS+LF +F F N + +
Sbjct: 295 GTCKDCVLSNLFASLGKDNQY----TSSFLFFCYFLHFGNAYFQY 335
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 247 GLYPKMHF*FCWVWNGISTEFNIIIF 170
G YP + FCWV+ S F +++F
Sbjct: 500 GYYPSAWWKFCWVFATPSVCFGVLLF 525
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 247 GLYPKMHF*FCWVWNGISTEFNIIIF 170
G YP + FCWV+ S F +++F
Sbjct: 500 GYYPSAWWKFCWVFATPSVCFGVLLF 525
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 247 GLYPKMHF*FCWVWNGISTEFNIIIF 170
G YP + FCWV+ S F +++F
Sbjct: 500 GYYPSAWWKFCWVFATPSVCFGVLLF 525
>AF067624-5|AAC17564.4| 506|Caenorhabditis elegans Hypothetical
protein M01B12.5a protein.
Length = 506
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 128 ESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHF 235
E T+ + ++N DD F +PH E +HF
Sbjct: 355 EMETIIEEERVLVNSEDDSLFMNAFIPHKLEHVLHF 390
>AC199172-11|ABO33270.1| 311|Caenorhabditis elegans F-box a protein
protein 50, isoforma protein.
Length = 311
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 164 INKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDLEMVCDH 313
IN Y D YT S +++ Q +ET + +KDL++V H
Sbjct: 68 INMYLDRIRINYTDSANGHSNVNYNEQKKETDEENFMDSAVKDLKIVLKH 117
>AC199172-4|ABO33272.1| 304|Caenorhabditis elegans F-box a protein
protein 29 protein.
Length = 304
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 158 CIINKY-DDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDLEMVCDHTINLF 328
C ++ Y D++E Y+V S M Q + + ++ KDL+++ HT L+
Sbjct: 58 CYVSIYFDEIEII-YSVTMNGRSYMQSNRQNKTIEGVNCMEAAFKDLKILLKHTSKLY 114
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 26.2 bits (55), Expect = 7.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 58 SVTFYNHCLGNIILIGTVF 2
S++ YNHCL +L+ F
Sbjct: 158 SISVYNHCLKGFVLVANTF 176
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 26.2 bits (55), Expect = 7.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 58 SVTFYNHCLGNIILIGTVF 2
S++ YNHCL +L+ F
Sbjct: 158 SISVYNHCLKGFVLVANTF 176
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 26.2 bits (55), Expect = 7.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 58 SVTFYNHCLGNIILIGTVF 2
S++ YNHCL +L+ F
Sbjct: 158 SISVYNHCLKGFVLVANTF 176
>AF098993-5|AAC67468.1| 325|Caenorhabditis elegans Hypothetical
protein T10B11.6 protein.
Length = 325
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 76 SW**RFRAYLQNIRLPK*KPYIREFIKMYY 165
+W RAYLQ I L P++R F+ +YY
Sbjct: 218 TWFLNLRAYLQ-IPLLTMVPFLRSFVSIYY 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,889,078
Number of Sequences: 27780
Number of extensions: 184024
Number of successful extensions: 515
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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