Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11a03
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    27   3.5  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   4.6  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   8.0  

>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 230 NYPIVSRHLVKRINPHQLYLFW*K*IKT 147
           +YP VS  L+ +I PHQ   F+ + IKT
Sbjct: 195 SYPSVSFSLLSQITPHQRCSFYAQVIKT 222


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 493 SSLSHLRPVPL*CHQLRLIRPKLNQRSLSP 404
           ++LSH  PVP+   ++ L + KL+Q  + P
Sbjct: 179 NNLSHSLPVPMISREINLKKGKLDQAKIPP 208


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 258 DSIFHSNETQLPNSFKTSGKANQ-STSTLLI 169
           +S+F SN T LP+S K   +A +  T T+L+
Sbjct: 285 NSLFFSNSTPLPSSLKIKKEAPKLETHTILV 315


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 599 MYWDNQYQTISG*TFPGLSLNLSSHCEWLRF 507
           MY D ++      T  GL  + + HC WL+F
Sbjct: 631 MYLDFEFNENFNATTFGLLSSFTKHCVWLKF 661


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/69 (18%), Positives = 27/69 (39%)
 Frame = +1

Query: 469 LGEDGSKNLVSRKKRNHSQCEDKFNERPGNVYPEIVWYWLSQYIKPEDIGNFAGINKTTY 648
           LG D    ++ R K+ +     K +E   ++Y + +W W+    +  +   F     T +
Sbjct: 409 LGSDIQGTILDRVKKGYQFDSQKNSELVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDF 468

Query: 649 ALTKRESFW 675
           +       W
Sbjct: 469 SYQGALGIW 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,736
Number of Sequences: 5004
Number of extensions: 52366
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)