Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11a03
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0253 + 15871870-15871949,15872101-15872170,15872666-158727... 31 1.2
09_01_0093 - 1360596-1360625,1363562-1364266 29 3.6
02_05_0420 + 28821717-28821854,28821944-28822210,28822299-288225... 29 3.6
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 29 4.8
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 29 4.8
04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738 29 4.8
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313 29 4.8
01_01_0986 + 7791032-7791124,7791484-7791633,7791782-7791874,779... 28 6.3
09_04_0527 - 18337968-18338077,18338440-18341212 28 8.3
06_03_1234 - 28586365-28587973,28590411-28590694 28 8.3
04_03_0626 + 18135267-18136304 28 8.3
>03_03_0253 +
15871870-15871949,15872101-15872170,15872666-15872701,
15873576-15873630,15873859-15873941,15874019-15874850,
15875184-15875286,15875359-15875498,15875649-15875880,
15876203-15876338,15877208-15877302,15877381-15877504,
15877690-15877812
Length = 702
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 439 LDAVDDIIEELGEDGSKNLVSRKKRNHSQCEDKFNERPGNVYPEIVWYWLSQY 597
+ + ++ +E+G K V R K HS C+D GN+ +I YW +Y
Sbjct: 442 MSEISEMNQEIGRTKKKKRVRRSKSYHS-CQDL----AGNISNDIAKYWAQRY 489
>09_01_0093 - 1360596-1360625,1363562-1364266
Length = 244
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 331 VLEDFPVNVKPKDAKPTDPLKLTKAEKVTADLTWDELDAVDD-IIEELGEDGSK 489
V++ + V V D T ++ K TAD + D+ D + D ++E+LGEDG++
Sbjct: 83 VIQKYKVKVVAADEVGTSS---SQGGKGTADGSGDKGDGLQDGVVEDLGEDGTE 133
>02_05_0420 +
28821717-28821854,28821944-28822210,28822299-28822568,
28822656-28823246,28823336-28823479
Length = 469
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 346 PVNVKPKDAKPTDPLKLTKAEKV---TADLTWDELDAVDDIIEELGEDGSKNLVS 501
P NV D T K K + +A+ T D D VDD L + GSKN++S
Sbjct: 110 PENVSAADTASTHQAKPAKQRRYIPQSAERTLDAPDLVDDYYLNLLDWGSKNVLS 164
>04_03_0616 -
18052596-18053779,18053935-18054099,18056236-18056260,
18057259-18057312,18057354-18057619,18058633-18059371
Length = 810
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 203 PDVLKLLGNCVSFE*KIESYSFINRK 280
P+++KLLG C+ FE + Y F+ K
Sbjct: 542 PNIVKLLGCCLQFEAPMLVYEFVENK 567
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 203 PDVLKLLGNCVSFE*KIESYSFINRK 280
P+++KLLG C+ FE + Y F+ K
Sbjct: 505 PNIVKLLGCCLQFEAPMLVYEFVQNK 530
>04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738
Length = 707
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 203 PDVLKLLGNCVSFE*KIESYSFINRK 280
P+++KLLG C+ FE + Y F+ K
Sbjct: 451 PNIVKLLGCCLQFEAPMLVYEFVQNK 476
>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
Length = 739
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 203 PDVLKLLGNCVSFE*KIESYSFINRK 280
P+++KLLG C+ FE + Y F+ K
Sbjct: 482 PNIVKLLGCCLQFEAPMLVYEFVQNK 507
>01_01_0986 +
7791032-7791124,7791484-7791633,7791782-7791874,
7792440-7792474,7792544-7793009,7793085-7793312,
7793387-7793446
Length = 374
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 415 TADLTWDELDAVDDIIEELGEDGSKNLVSRKKRNHSQC 528
T+D E D +D+ + EDG NL R+ NH +C
Sbjct: 85 TSDHGLFEYDPIDEQRQNPLEDGLANLEDRRIENHMRC 122
>09_04_0527 - 18337968-18338077,18338440-18341212
Length = 960
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Frame = +1
Query: 364 KDAKP--TDPLKLTKAEKVTA-----DLTWDELDAVDDIIEELGEDGSKNLV 498
K AKP + +L KAE VTA L DEL+ ++ ++ELG +G K V
Sbjct: 23 KLAKPLLANKTELKKAELVTALPVNMKLIKDELEVINAFLKELGMNGCKGEV 74
>06_03_1234 - 28586365-28587973,28590411-28590694
Length = 630
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 568 EIVWYWLSQYIKPEDIGNFAGINKTTYALTKRESFWR 678
E++ + + P DI + + + + Y LT+ E WR
Sbjct: 224 EVLCQSILSRLSPRDIASVSSVCRRLYLLTRNEDLWR 260
>04_03_0626 + 18135267-18136304
Length = 345
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 203 PDVLKLLGNCVSFE*KIESYSFI-NRKL 283
P+++KLLG C+ FE + Y F+ NR L
Sbjct: 77 PNIVKLLGCCLQFEAPMLVYEFVQNRTL 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,006,012
Number of Sequences: 37544
Number of extensions: 276099
Number of successful extensions: 754
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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