Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11a03
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40160-2|AAA81156.1| 547|Caenorhabditis elegans Hypothetical pr... 32 0.35
AF039044-2|AAG24120.1| 275|Caenorhabditis elegans Hypothetical ... 32 0.46
AC087081-2|AAK66036.1| 336|Caenorhabditis elegans Hypothetical ... 31 0.80
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 31 1.1
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 31 1.1
Z78200-4|CAB01582.1| 289|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 29 3.2
AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical ... 28 5.7
U50069-7|AAB37561.1| 913|Caenorhabditis elegans Hypothetical pr... 28 7.5
>U40160-2|AAA81156.1| 547|Caenorhabditis elegans Hypothetical
protein C56E10.1 protein.
Length = 547
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 294 HYNWSFL-FIKLYDSIFHSNETQLPNSFKTSGKANQSTSTLLILVKIDKNIELF 136
H N +F + YD IFH + T P+S+K + N S S ++ K+++ E F
Sbjct: 378 HLNQAFYSYENKYDMIFHPDGTVPPHSWKKNENPNDSISQMMTKQKMEEMKEEF 431
>AF039044-2|AAG24120.1| 275|Caenorhabditis elegans Hypothetical
protein F48G7.4 protein.
Length = 275
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 448 VDDIIEELGEDGSKNLVSRKKRNHSQCEDKFNERPGNVYPEIVWYWLSQYIKPEDIGNFA 627
VDD+ E+ + GS + +K + + N PG + ++ + S+Y+K DI
Sbjct: 73 VDDLKREMQKRGSSCKIRARKLQWNNNSEHRNVEPGVHFLRLLGCFDSKYLKSLDIVKSN 132
Query: 628 GINKTTYALTKRESFW 675
+ T L K E +W
Sbjct: 133 FTSATINMLAKSEYWW 148
>AC087081-2|AAK66036.1| 336|Caenorhabditis elegans Hypothetical
protein Y82E9BL.12 protein.
Length = 336
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 367 DAKPTDPLKLTKAEKVTADLTWDELDAV 450
D+K +DP++L K EK WD LD V
Sbjct: 20 DSKRSDPVELPKTEKKELTTDWDTLDGV 47
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 475 EDGSKNLVSRKKRNHSQCEDKFNERPGNVYPEI----VWYWLSQYIKPEDIGNFAGINKT 642
++ + N +RK N+ Q N+ G V E+ ++ W+ + E+ G F +N+T
Sbjct: 233 DEATSNWANRKWENY-QYLTYLNDITGRVRGEVHNHPIFPWVCDF--SEENGGFRQLNRT 289
Query: 643 TYALTKRESFWRSXYNR 693
Y L K + R Y+R
Sbjct: 290 KYRLCKGDDQLREMYSR 306
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 475 EDGSKNLVSRKKRNHSQCEDKFNERPGNVYPEI----VWYWLSQYIKPEDIGNFAGINKT 642
++ + N +RK N+ Q N+ G V E+ ++ W+ + E+ G F +N+T
Sbjct: 233 DEATSNWANRKWENY-QYLTYLNDITGRVRGEVHNHPIFPWVCDF--SEENGGFRQLNRT 289
Query: 643 TYALTKRESFWRSXYNR 693
Y L K + R Y+R
Sbjct: 290 KYRLCKGDDQLREMYSR 306
>Z78200-4|CAB01582.1| 289|Caenorhabditis elegans Hypothetical
protein T04H1.5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 442 DAVDDIIEELGEDG-SKNLVSRKKRNHSQCEDKFNERPGNVYPEIVWYWLSQYIKPEDIG 618
+ +DD + D SK LV + CE+ + R G P + W+W S + E+
Sbjct: 147 ELIDDYSKRRKLDANSKQLVKDIRSCRKVCEE-LDHRIGKKVPSVSWFWRSYKVAQEETT 205
Query: 619 NF 624
++
Sbjct: 206 SY 207
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +1
Query: 331 VLEDFPVNVKPKDAKPTDPLKLTKAEKVTADLTWDELDAVDDIIEELGEDGSKNLVSRKK 510
+L+D + P + D + + EKV L E D+ E E K +K
Sbjct: 826 MLDDLEADRDPDAKRKVDEFRRCEMEKVEKALRSGESKKSDEKSERKSEKKEKKRDKERK 885
Query: 511 RNHSQCEDKFNER 549
R+ S+ D+ +R
Sbjct: 886 RSRSRSRDRDRDR 898
>AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical
protein Y39H10A.6 protein.
Length = 684
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 448 VDDIIEELGEDGSKNLVSRKKRNHSQCEDKFNERP 552
VD+ ++++G G K V+++ +NH+Q + + P
Sbjct: 3 VDEQLDDVGRKGKKMSVAQRLQNHAQLSPRSQDDP 37
>U50069-7|AAB37561.1| 913|Caenorhabditis elegans Hypothetical
protein C09B9.7 protein.
Length = 913
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 334 LEDFPVNVKPKDAKPTDPLKLTKAEKVTAD-LTWDELDAVDDIIEE 468
L+DF N +D K TD LK + E + D + D +D +DD+IE+
Sbjct: 40 LKDFLKNQVLQDQKVTDKLKRMEIEILGLDQIRKDSID-LDDVIEQ 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,129,125
Number of Sequences: 27780
Number of extensions: 279634
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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