Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11a01
(265 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 26 0.75
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 1.3
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 24 3.0
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 3.0
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 24 4.0
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 24 4.0
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 24 4.0
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 23 5.3
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 23 7.0
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 23 7.0
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 23 7.0
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 23 9.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 23 9.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 23 9.2
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 23 9.2
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 23 9.2
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 23 9.2
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 26.2 bits (55), Expect = 0.75
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 249 LLFLINLCDGAALVHTVEPPLL 184
L L ++CD A +H ++PPL+
Sbjct: 163 LKILADVCDAVAAMHYLDPPLI 184
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 1.3
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +2
Query: 23 NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGST 202
N T A +T+ +N + + N TN+ A A + + N +T
Sbjct: 63 NNNNNTSAANTNAAYNANTAANANANTATTTNAAATTSAAYNPNAPANTNAAYYPNAAAT 122
Query: 203 VWTNAAPSHK 232
TNA S K
Sbjct: 123 TTTNADGSDK 132
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 24.2 bits (50), Expect = 3.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 133 RWLFGTNRRRQNHVTFY 183
RWLF + +RRQ + + Y
Sbjct: 329 RWLFSSGKRRQKYESSY 345
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.2 bits (50), Expect = 3.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 32 MKTDAQSTSNTHNFMYSPDNNLEVV 106
M ST+N+ +F+ SP NN +++
Sbjct: 451 MSLQLPSTANSISFLSSPPNNNDII 475
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 23.8 bits (49), Expect = 4.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 112 NDDHLQIVVGRIHEVVRVRCRLGVRFHN 29
N DH+ +V G + R++ L +FHN
Sbjct: 435 NADHIILVHGEQTNMGRLKSALASKFHN 462
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 23.8 bits (49), Expect = 4.0
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 78 ILPTTIWRWSSLPIRTAITMAIWN*PPPPKSCHLLLATAVRPC 206
+L T ++ + P +++ W PPP S + A +R C
Sbjct: 12 LLATAVYGQVASPELHSLSRRNWKKPPPFPSTNASYAPVIRSC 54
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 23.8 bits (49), Expect = 4.0
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 83 PDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGSTVWTNAAPSHKLIKNNKN 253
P + +EV+ + +G + A +M FISN G+ + T K K K+
Sbjct: 895 PWHIIEVLSLKKINGAASIHAAQHALLSLMPIFISNSGNDIRTECKAGEKEYKEAKS 951
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 23.4 bits (48), Expect = 5.3
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +3
Query: 201 PCGPTRRH 224
PCGPT+RH
Sbjct: 139 PCGPTQRH 146
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 23.0 bits (47), Expect = 7.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 232 FVRWRRVGPHGRTAVANKR*HDFGG 158
F+RWR+ H + AV ++ D G
Sbjct: 30 FIRWRQRDIHEKRAVRKQKMEDIKG 54
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 131 HDGYLELTAAAKIMSPFISNGGSTVWTN 214
H Y +T A +SPF+ N WT+
Sbjct: 1349 HYIYFWITLTALCISPFLYNPHQFAWTD 1376
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 23.0 bits (47), Expect = 7.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 107 IITNSDGDHDGYLELTAAAKIMS 175
+I N G H GY+ A+ I+S
Sbjct: 101 VILNQQGQHLGYIAEQGASSILS 123
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 22.6 bits (46), Expect = 9.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +2
Query: 176 PFISNGGSTVWTNAAPS 226
PF+SNG + W P+
Sbjct: 33 PFVSNGSNLTWYCCGPT 49
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 22.6 bits (46), Expect = 9.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 46 PVDIEHAQLHVFSRQ 90
P D E+A HVFSRQ
Sbjct: 963 PPDTENAVDHVFSRQ 977
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 22.6 bits (46), Expect = 9.2
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 119 SDGDHDGYLELTAAAKIMSPFISNGGSTVWTNAAP-SHKLIKNN 247
SDG LTA++ SP +S ++ N P S K + +N
Sbjct: 170 SDGSSSKSASLTASSAAASPTVSFSPASTSENLTPTSSKSLASN 213
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 22.6 bits (46), Expect = 9.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 34 ENGRPVDIEHAQLHVFSRQQSGGGHHYQFG 123
EN R ++ H GGG YQFG
Sbjct: 304 ENFRKGEVAHTLGWPMRNDTYGGGFMYQFG 333
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 22.6 bits (46), Expect = 9.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 38 TDAQSTSNTHNFMYSPDNNLEVVIITNSDG 127
TDA + N+HN + NN + V +++ G
Sbjct: 359 TDASLSPNSHNTSDNEQNNEDYVSVSSLVG 388
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 22.6 bits (46), Expect = 9.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 56 SNTHNFMYSPDNNLEVVIITN 118
S+ F+Y P + L +V+ITN
Sbjct: 51 SDNVRFVYQPLDELYIVLITN 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,070
Number of Sequences: 5004
Number of extensions: 21891
Number of successful extensions: 57
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -