Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10p16
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   0.76 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.0  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      21   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 435 IREFYEKNGELLPGKKGISLTPEQWRKLLSV-GEEVNE 545
           I+ F  KN +    ++GI + PE+W+K++   G+ + E
Sbjct: 307 IQFFANKNQKFY--ERGIMMLPERWQKVIDQNGQHITE 342


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 355 MIKSQHGCYRARNY*KSENSKEKYM*T*ENFM 450
           M+ +QH C R  NY  S  S  + +   E+F+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFV 32


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 355 MIKSQHGCYRARNY*KSENSKEKYM*T*ENFM 450
           M+ +QH C R  NY  S  S  + +   E+F+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFV 32


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 363 EPTWVLQGKKLLKVREFKGKVYVDI 437
           E TW L GK+L      +   YV +
Sbjct: 424 EITWELDGKRLSNTERLQVGQYVTV 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,211
Number of Sequences: 438
Number of extensions: 2525
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)