Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10p11
         (110 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    23   4.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    22   9.3  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    22   9.3  

>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 36  HVNTPCSPKEK 4
           HV  PCSP EK
Sbjct: 133 HVTNPCSPDEK 143


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 52  VWVTQSSGFRENILVKQK 105
           +W + +SG R+N+L  Q+
Sbjct: 844 IWSSYASGIRQNLLSDQE 861


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 107 FFCFTRIFSRNPEDCVTHTRKHNLT*THLAHQ 12
           FF F  + +   ++ +TH  K++    HL H+
Sbjct: 262 FFTFINLLNNVAKEKLTHIIKYDDYLVHLVHE 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,829
Number of Sequences: 5004
Number of extensions: 5753
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 18
effective length of database: 2,272,406
effective search space used: 40903308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)