Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10p07
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0269 - 18991203-18991307,18991448-18991525,18992724-189929...    30   1.6  
11_01_0096 - 719749-719851,719957-720074,720562-720922                 28   6.4  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    28   6.4  
05_05_0173 + 22956927-22958615                                         28   6.4  
03_05_0276 + 22646416-22646760,22646858-22647090,22647184-226472...    28   6.4  
08_02_0796 - 21300251-21300373,21300846-21301721                       28   8.4  
05_04_0031 + 17353292-17354353                                         28   8.4  

>06_03_0269 -
           18991203-18991307,18991448-18991525,18992724-18992910,
           18993096-18993265,18994228-18994306,18995006-18995220,
           18995346-18995429,18995732-18995734
          Length = 306

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 268 NLFWFSLFVHDCGHXXXXRWLHNGRSSASRQRLGWWRRQFN 146
           +L+W ++ ++  G      WL  G   A  +R  WW+R FN
Sbjct: 174 SLYWQNVQLYTFGVIFNMGWLIYGDFKAGFERGPWWQRLFN 214


>11_01_0096 - 719749-719851,719957-720074,720562-720922
          Length = 193

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 632 PLQPPLV-DLPAEMLPPPAPS 691
           P +PPL  DLPA   PPP PS
Sbjct: 30  PPEPPLASDLPARSPPPPYPS 50


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 626  SAPLQPPLVDLPAEMLPPPAPSL 694
            S P QPPL   P    PPP P L
Sbjct: 1153 SPPCQPPLPPSPPPATPPPPPPL 1175


>05_05_0173 + 22956927-22958615
          Length = 562

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 620 LSSAPLQPPLVDLPAEMLPPPAP 688
           L + PL PP    PAE++ PP P
Sbjct: 59  LETEPLHPPYSPPPAELVRPPTP 81


>03_05_0276 +
           22646416-22646760,22646858-22647090,22647184-22647259,
           22647383-22647459,22647559-22647592,22647699-22647848,
           22647935-22648069,22648156-22648227
          Length = 373

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
 Frame = +2

Query: 32  SLYNTIAYIERLLNIGTVNDSEI------TMLIADFYDLYSNYNIE 151
           +LY T++YI+R L+  ++N  ++       MLIA  Y+  S  N+E
Sbjct: 159 TLYLTVSYIDRFLSAKSINRQKLQLLGVSAMLIASKYEEISPPNVE 204


>08_02_0796 - 21300251-21300373,21300846-21301721
          Length = 332

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 620 LSSAPLQPPLVDLPAEMLPPPAP 688
           L  AP  PPL+ LP    PPP P
Sbjct: 90  LPEAPPSPPLLALPPPPPPPPPP 112


>05_04_0031 + 17353292-17354353
          Length = 353

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 620 LSSAPLQPPLVD-LPAEMLPPPAP 688
           L +A L P L   LPAE+LPPP+P
Sbjct: 66  LRAACLPPRLTRALPAELLPPPSP 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,299,711
Number of Sequences: 37544
Number of extensions: 208084
Number of successful extensions: 1084
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)