Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10p07
         (712 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L41690-1|AAA98482.1|  328|Homo sapiens tumor necrosis factor rec...    31   5.4  
BT006934-1|AAP35580.1|  312|Homo sapiens TNFRSF1A-associated via...    31   5.4  
BC004491-1|AAH04491.1|  312|Homo sapiens TNFRSF1A-associated via...    31   5.4  
AY995114-1|AAX89407.1|  312|Homo sapiens tumor necrosis factor r...    31   5.4  
AY575851-1|AAS68637.1|  312|Homo sapiens TNFRSF1A-associated via...    31   5.4  
AJ311614-1|CAC38018.2|  312|Homo sapiens TNFRSF1A-associated via...    31   5.4  

>L41690-1|AAA98482.1|  328|Homo sapiens tumor necrosis factor
           receptor type 1 associated protein protein.
          Length = 328

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 617 DLSSAPLQPPLVDLPAEMLPPPAP 688
           +++SAPLQPP+  L +E+ PPP P
Sbjct: 190 EVASAPLQPPVPSL-SEVKPPPPP 212


>BT006934-1|AAP35580.1|  312|Homo sapiens TNFRSF1A-associated via
           death domain protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 617 DLSSAPLQPPLVDLPAEMLPPPAP 688
           +++SAPLQPP+  L +E+ PPP P
Sbjct: 174 EVASAPLQPPVPSL-SEVKPPPPP 196


>BC004491-1|AAH04491.1|  312|Homo sapiens TNFRSF1A-associated via
           death domain protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 617 DLSSAPLQPPLVDLPAEMLPPPAP 688
           +++SAPLQPP+  L +E+ PPP P
Sbjct: 174 EVASAPLQPPVPSL-SEVKPPPPP 196


>AY995114-1|AAX89407.1|  312|Homo sapiens tumor necrosis factor
           receptor 1-associated death domain protein protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 617 DLSSAPLQPPLVDLPAEMLPPPAP 688
           +++SAPLQPP+  L +E+ PPP P
Sbjct: 174 EVASAPLQPPVPSL-SEVKPPPPP 196


>AY575851-1|AAS68637.1|  312|Homo sapiens TNFRSF1A-associated via
           death domain protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 617 DLSSAPLQPPLVDLPAEMLPPPAP 688
           +++SAPLQPP+  L +E+ PPP P
Sbjct: 174 EVASAPLQPPVPSL-SEVKPPPPP 196


>AJ311614-1|CAC38018.2|  312|Homo sapiens TNFRSF1A-associated via
           death domain, TRADD protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 617 DLSSAPLQPPLVDLPAEMLPPPAP 688
           +++SAPLQPP+  L +E+ PPP P
Sbjct: 174 EVASAPLQPPVPSL-SEVKPPPPP 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,272,540
Number of Sequences: 237096
Number of extensions: 971190
Number of successful extensions: 3442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3434
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)