Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10p07
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21308-11|AAB93312.3|  265|Caenorhabditis elegans Roller: helica...    28   5.7  
U21308-10|AAN65281.1|  329|Caenorhabditis elegans Roller: helica...    28   5.7  
M25477-1|AAA27991.1|  329|Caenorhabditis elegans collagen protein.     28   5.7  
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U21308-11|AAB93312.3|  265|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 8, isoform b
           protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 687 GAGGGNISAGKSTNGGCN 634
           G GGGN  +G ST GG N
Sbjct: 100 GNGGGNYGSGASTGGGAN 117


>U21308-10|AAN65281.1|  329|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 8, isoform a
           protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 687 GAGGGNISAGKSTNGGCN 634
           G GGGN  +G ST GG N
Sbjct: 100 GNGGGNYGSGASTGGGAN 117


>M25477-1|AAA27991.1|  329|Caenorhabditis elegans collagen protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 687 GAGGGNISAGKSTNGGCN 634
           G GGGN  +G ST GG N
Sbjct: 100 GNGGGNYGSGASTGGGAN 117


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 614 IDLSSAPLQPP-LVDLPAEMLPPPAPS 691
           ID S  P+ PP      AE LPPPAP+
Sbjct: 185 IDESEIPVAPPNFSSAAAEPLPPPAPT 211


>AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical
           protein F56A6.5 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 162 HHPKRCLEADDLPLCSQRRLR-RCPQSCTN 248
           H+P+R  E+D+ P+C+  +L+ +  + CTN
Sbjct: 75  HNPRRAHESDESPICTACQLKSKTLRICTN 104


>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
           protein F54F12.1 protein.
          Length = 1217

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 632 PLQPPLVDLPAEMLPPPAP 688
           P+ PP+V  PA ++P PAP
Sbjct: 781 PVLPPVVPAPAPVVPAPAP 799


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,230,961
Number of Sequences: 27780
Number of extensions: 165826
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)