Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10p07
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   5.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.7  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 65  LLNIGTVNDSEITMLIADFYDLY 133
           L+++  + D+E  +LIA  Y LY
Sbjct: 108 LIHLKEIEDTEPILLIAYIYHLY 130


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 61  AIVKYRHGKR*RNYNAYSRFLR 126
           A+++YR  K  + ++ ++RFL+
Sbjct: 169 AVIEYRIPKSGKGFSLFARFLK 190


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 410 LDDRQQLLEAIRNEKNRTRLRPVKPKTAPETNTIIEV 520
           LDD   +L+ ++ E  R    P K  T P     I++
Sbjct: 344 LDDGIDILDDVKCEDERVISIPDKEITVPSNEETIDI 380


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 687 GAGGGNISAGKSTNGG 640
           GA GG+I  G +  GG
Sbjct: 33  GASGGSIVVGANNGGG 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,522
Number of Sequences: 438
Number of extensions: 1935
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)