Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10p04
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    28   1.1  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.1  
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    27   2.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    27   3.5  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   4.6  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   6.0  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    26   6.0  

>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 121 DEVEDFITKKMIAKETSDHENSSKSNLQN 207
           DEV+  +  K I ++ SD E SSK   QN
Sbjct: 58  DEVDGDVKPKKIGRKNSDQEPSSKRKAQN 86


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/91 (21%), Positives = 40/91 (43%)
 Frame = -2

Query: 698 LLIAANKNPIVDSNPAIIVITLHPNLSTIALAIGPANSGVAINRLPINDV*DCVVSKYLV 519
           +L   +  P + S+   + I  HP+ S +     P NS +   R+P N   + V  +  +
Sbjct: 568 MLQKLSMQPAISSSSEFVPIESHPSSSAVVPIEEPKNSIIEKKRVPHNAARNSVNLEVTL 627

Query: 518 NSSCRSPNEKARPSTQADTRKAEATTTHPQP 426
            +S +  +  +  S++   R + A T   +P
Sbjct: 628 PNSKKRFSSFSGSSSKLPVRPSTALTDKRKP 658


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +2

Query: 5   LRTDNERASRSNETNLNKKHSVRFSDAERAL*NKFGGLKTRLKIL*QRK*LPKKLVITKT 184
           L ++NE  +  +E    KK   R +DAE  L  ++  LKT    L +R+ L KKL  + T
Sbjct: 17  LISNNEAKNHEDEETHQKKRRRRTTDAEATLLEQY-FLKTPKPSLIERQELSKKLKSSMT 75


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -2

Query: 536 VSKYLVNSSCRSPNEKARPSTQADTRKAEATTTHPQPPSG 417
           +S     SS RS      P+T    +    T   PQPPSG
Sbjct: 277 ISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSG 316


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 595 GPIASAIVDRFGCRVMTIIAGLLSTIGFLLAA 690
           GP+ SA + R GC  + + A L  T G L+A+
Sbjct: 191 GPLLSAALKRVGCNNVRLNAILSDTTGTLVAS 222


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 385 RNKNCLRRHHH 353
           +N NCLR HHH
Sbjct: 126 KNPNCLRNHHH 136


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 497 SDSCTKSSQDISKRHNLKHH 556
           SDS T SS D +K+ N K H
Sbjct: 139 SDSATSSSSDTNKKVNRKEH 158


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
 Frame = +1

Query: 433 GWVVVASAFLVSACVDGLAF----SFGLLHEEFTRYFETTQSQ-----TSLIGSLFIATP 585
           G++VVAS+  +SA V G  F    S GL +       + T  +     T+L+ + +IAT 
Sbjct: 163 GFIVVASSSTISAYVIGSVFISIGSSGLDYLNTLVVGDLTSLKWRGFMTALLSTPYIATV 222

Query: 586 LLAGPIASAIVD---RFGCRVMTIIAGLLST 669
              G I   I+D   R+G  +  II   + T
Sbjct: 223 WFTGFIVQGIIDSNWRWGYGMFAIIMPAVMT 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,428
Number of Sequences: 5004
Number of extensions: 46546
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)