Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10o19
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.9  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.8  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.0  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 389 CEQVYPDKDFSLKLKR 436
           CE+ YPD  F++ L+R
Sbjct: 219 CEEPYPDIVFNITLRR 234


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 398 VYPDKDFSLKLKRVINMF 451
           V+P   FSL L +V+++F
Sbjct: 139 VHPSATFSLDLNKVVSVF 156


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 389 CEQVYPDKDFSLKLKR 436
           C++ YPD  F++ L+R
Sbjct: 218 CDEPYPDIFFNITLRR 233


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 117 NTRNNMSRYKKMLFSFLSYTKLNMVSAPNNKYKFIFIP 4
           N  NN + Y K L+  ++Y +   V  P   Y   F P
Sbjct: 96  NYNNNYNNYNKKLYYNINYIEQIPVPVPVPVYCGNFPP 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,473
Number of Sequences: 438
Number of extensions: 3042
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)