Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10o16
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   2.1  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   6.3  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   8.4  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 213  CH*KLVNLSIYSFYPGF--ISFNSNDALYEMNPIKC*YIRVCRKKLDLKVITYS-ALCNK 383
            C   +V    Y++  GF  ISF        +  +K  Y+R    KL+LK++  S  +  K
Sbjct: 994  CFPNVVKHDFYAYAIGFYSISFPMYAIHASVKFLKLDYLRSLMNKLNLKIVMRSLVMALK 1053

Query: 384  YILILML 404
            Y+L+  L
Sbjct: 1054 YLLLAFL 1060


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 231 SPVFSDTWNFNFVAFDNIHVYRTVSTNYF 145
           SP+ S   NF+ + F   HV R+ S  Y+
Sbjct: 75  SPIVSVETNFDSLGFPKTHVSRSKSDTYY 103


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 40  WRPPSVGFVGHVF*KNM 90
           W+ PS+GFV  +F  N+
Sbjct: 61  WKSPSIGFVNRIFHPNI 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,095
Number of Sequences: 5004
Number of extensions: 58682
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)