Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10o16
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.9  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   2.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +3

Query: 327 VCRKKLDLKVITYSALCNKYI-LILMLIEHCRL----VSCPPTLKDGQKTEK 467
           +C    D   + YSAL + YI +++ML  + R+    VS    +  G +T K
Sbjct: 238 ICELTNDAGYVVYSALGSFYIPMLVMLFFYWRIYNAAVSTTKAINQGFRTTK 289



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 204 SSKCH*KLVNLSIYSFYPGFISFNSNDALYEMNPIKC 314
           +S+C  K   + I   YP   + N+     E  P KC
Sbjct: 329 NSRCSVKREKIKISVSYPSTETLNTKCNTLERTPSKC 365


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 410 TLQACQLSTNTQGWTKNRKVVS 475
           T+  CQ  T + GWT  ++  S
Sbjct: 17  TIVMCQTFTYSHGWTNGKRSTS 38


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 13  IFHYDGFQTWRPPSV 57
           I HY G   W PP++
Sbjct: 126 ILHYTGKVLWTPPAI 140


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 13  IFHYDGFQTWRPPSV 57
           I H+ G   W+PP++
Sbjct: 126 ILHHTGKVVWKPPAI 140


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 19  HYDGFQTWRPPSV 57
           +Y G   W+PP+V
Sbjct: 136 YYSGLVVWQPPAV 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,508
Number of Sequences: 438
Number of extensions: 3765
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)