Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10o05
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    33   0.19 
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657           29   3.0  
11_06_0709 - 26487235-26487423,26488003-26488081,26488164-26488375     29   5.3  
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923...    28   7.0  
11_03_0181 - 11301759-11301838,11302294-11303095                       28   9.2  
08_02_0640 - 19636968-19638230                                         28   9.2  
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150...    28   9.2  
03_06_0146 - 31976538-31978643,31978653-31978751                       28   9.2  
02_04_0014 + 18916942-18917142,18917350-18917628,18917719-189181...    28   9.2  

>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
            26699321-26699416
          Length = 1515

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 224  QELNNIKSKIELYEAQVSTCKNVR-QIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVED 400
            +E+  ++ KI+ Y  Q+++ +    QIK N  S   T +++  Q  +  NK+F  +S   
Sbjct: 1342 REIQYLEQKIQKYSGQINSLEETLVQIKGNAESGTSTLVDQLDQLESHFNKSFSHFSARS 1401

Query: 401  SISSNEV 421
               S E+
Sbjct: 1402 FACSEEL 1408


>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
          Length = 1136

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +2

Query: 233 NNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLN---KNFITYSVEDS 403
           NN++  +  +   +S+   V  ++QNR S        +LQ LT L+    N I+ S+ DS
Sbjct: 279 NNLEGTVPAWLGNLSSLVFV-SLQQNRLSGHIPESLGRLQMLTSLDLSQNNLISGSIPDS 337

Query: 404 ISSNEVLDNIDLEYD 448
           + +   L ++ L+Y+
Sbjct: 338 LGNLGALSSLRLDYN 352


>11_06_0709 - 26487235-26487423,26488003-26488081,26488164-26488375
          Length = 159

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 437 LEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALL 535
           +E+D   D  +  ++ PSS    MTV D  ALL
Sbjct: 104 IEWDSERDLPIVPQWTPSSRTRTMTVGDRHALL 136


>03_02_1025 +
           13289146-13289586,13291882-13292087,13292174-13292323,
           13292412-13292545,13292843-13292949,13293031-13293137,
           13293581-13293686,13294098-13294217,13294318-13294474,
           13295163-13295254,13295338-13295582,13295668-13296268,
           13296362-13296457,13296541-13296794,13297622-13297715,
           13299138-13299188
          Length = 986

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 314 SSNIKTRIEKQ-LQFL-TPLNKNFITYSVEDSISSNEVLDNIDLEYDDGVDFDVYDEYEP 487
           SSN K  +E++ LQF  TP N     + V   ++   +L  +D E DD V   +    E 
Sbjct: 513 SSNDKVAVEQEELQFASTPGNSGQGKFQVGFLLNRQTIL--VDTENDDSVSAVIQQAIEK 570

Query: 488 SSHW 499
           +++W
Sbjct: 571 TNYW 574


>11_03_0181 - 11301759-11301838,11302294-11303095
          Length = 293

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +3

Query: 402 AFQATKCWTTSIWNMT---TALILTF--TMNTNRPRI 497
           AF   KCWT+ +W+ T   T L+ T+  T +T+  R+
Sbjct: 229 AFPHVKCWTSPVWSATSRPTVLLSTWQVTCSTSSHRV 265


>08_02_0640 - 19636968-19638230
          Length = 420

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 545 PKDRVMFLDTVTTNNVSSKYEE 610
           P D++ FLD V  NN    YEE
Sbjct: 362 PNDQIFFLDDVMENNKEYSYEE 383


>06_01_0194 +
           1503350-1503554,1504399-1504490,1504835-1504935,
           1506186-1506276,1506616-1506674,1506764-1506884,
           1506959-1507027,1507321-1507373,1507688-1507796,
           1507895-1508065,1508148-1508306,1508561-1508650,
           1508751-1508933,1509837-1510027,1510340-1510787
          Length = 713

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 32/149 (21%), Positives = 67/149 (44%)
 Frame = +2

Query: 98  DRITFTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVS 277
           D +T    E +  +V+E    L     +R+   K  +   V   ++    K++LY+  ++
Sbjct: 354 DNLTEEMEEKTENIVYEDFKFLTKDEMDRYDLSKYIDQGLVRAHMHGYVMKLQLYKKLLA 413

Query: 278 TCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGV 457
           T     +  Q +    + +IE+Q        K+ IT  V+    + +++DNI L+ ++ +
Sbjct: 414 TSAVDPENIQEKVK--QKKIEEQ-------RKSRITQVVKIPKVNRQIMDNI-LKEEEEM 463

Query: 458 DFDVYDEYEPSSHWSNMTVSDAKALLQNP 544
           D D+ ++ +         +   KALL +P
Sbjct: 464 DADLENDEKSGIKKKKKKLEMNKALLTDP 492


>03_06_0146 - 31976538-31978643,31978653-31978751
          Length = 734

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +2

Query: 425 DNIDLEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALLQNPPKDRV-MFLDTVTTNNVS-S 598
           D+ID + D  +D   YD+ +  S +   +VSD ++  +  P++      D +   +++  
Sbjct: 408 DDIDTDSDMEIDGGKYDDIDSESLYEEESVSDEQSDDEEEPEEFAGGGYDDIDYESLNGD 467

Query: 599 KYEEYIDCIVSNRTVENE 652
            +EEY+  ++++  ++NE
Sbjct: 468 DFEEYLQ-VLADGGIDNE 484


>02_04_0014 +
           18916942-18917142,18917350-18917628,18917719-18918114,
           18924837-18925085
          Length = 374

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 401 SISSNEVLDNI-DLEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALLQNPPKDRVMFL 568
           ++ S+E+L+ + D+E D G D D++      + W N      +AL+QN  ++ +M L
Sbjct: 245 ALLSDEMLEAVMDVE-DIGQDPDMFLSLNALAGWGNTGTIHLRALVQNQEEEELMRL 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,679,291
Number of Sequences: 37544
Number of extensions: 303630
Number of successful extensions: 861
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)