Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10o01
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 152 4e-38
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 81 2e-16
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.9
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 1.9
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 27 3.4
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 25 7.8
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 7.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 7.8
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 152 bits (369), Expect = 4e-38
Identities = 79/170 (46%), Positives = 111/170 (65%), Gaps = 5/170 (2%)
Frame = +1
Query: 193 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 372
VAA K SK+EE++ P++Y++ RS + L+ K+ +PYPHKF V+I+L EFI KY+ L
Sbjct: 57 VAAPKSSSKKEEDLDPSQYFENRSRTIMELRQ-TKDPNPYPHKFQVTITLPEFIAKYEGL 115
Query: 373 NNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDK 552
G+ V ++VAGRV +R +G KL FY++ A+G K+QVM A+ +T D F +
Sbjct: 116 ARGETKPEVEVAVAGRVLGLRTAGNKLRFYEIHADGKKLQVMCQAQDADTVD-FAAQHEH 174
Query: 553 LRRGDIIGCVGHPGKTK-----KGELSIIPKNIKLLAPCLHMLPHLHFGL 687
LRRGDIIG G+PG++ GELSI + LL+PCL MLP H+GL
Sbjct: 175 LRRGDIIGIRGYPGRSNPKGRADGELSIFARQCVLLSPCLRMLPKEHYGL 224
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 80.6 bits (190), Expect = 2e-16
Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Frame = +1
Query: 352 IEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETED- 528
IEK++N + V +V GR+ SIR SG+KL F+D+ K+QV+ N K TE+
Sbjct: 67 IEKWRNKITKSEIAMVRYTVCGRISSIRYSGSKLAFFDVLYGNKKLQVVFNKKNIGTEEE 126
Query: 529 ---KFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNI-KLLAPCLHMLP 669
KF L++GD I C G+ G++ GELSI + KLL+PCLH +P
Sbjct: 127 MKGKFIPRLKALQKGDCIQCSGNVGRSGSGELSIYATELPKLLSPCLHPIP 177
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Frame = +1
Query: 187 PVVAAEKKPSKQEEE------ISPNEYYKLRSGAVAALKNGLKE 300
P A+ KPS+ EE + PN++ R+G VAAL++ L++
Sbjct: 453 PTEASSTKPSEAAEESTPRFSVRPNKFTGSRAGFVAALESRLQK 496
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +1
Query: 196 AAEKKPS-KQEEEISP-NEYYKLRSGAVAALKNGLK---EDHPYPHKFNVSISLEEFIEK 360
A K+P+ K ++ S ++Y L SG + + + E PY + V+ S+ +
Sbjct: 448 AKNKQPATKLVQQASDFDQYVSLYSGYLQGFSDNFRPYVELLPYKNSRMVTHSIRFLEQS 507
Query: 361 YQNLNNGDVLENVTLSV 411
Y N++NG V N T V
Sbjct: 508 YTNVSNGLVFVNTTTDV 524
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +1
Query: 331 SISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAK 510
S L+E + KY++ N + ++ + I+ + + L + EG I+V+ +
Sbjct: 233 SYFLQESLHKYESTKNKIAYLSFGSNIGDKFEQIQTALSMLH----KIEG--IRVLDVSP 286
Query: 511 LYETEDKFFKDTDKLRRG 564
LYETE ++KD G
Sbjct: 287 LYETEPMYYKDQPSFLNG 304
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -3
Query: 97 NFLPWLSDLIHLT 59
+F+PWL+D+ HLT
Sbjct: 6 HFVPWLTDIRHLT 18
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 286 NGLKEDHPYPHKFNVSISLEEFIEKYQNLNN 378
NGL ++ P VS + E I+ Y+NLN+
Sbjct: 228 NGLSDNKSVPRVLVVSPTRELAIQTYENLNS 258
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 370 LNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKD 543
L NGD + VTLS + + S+ + G+ F + + A ++ + + ++ D F D
Sbjct: 536 LRNGDASKQVTLSESPKGDSLLDGGSLSYFTNNISSVAGLETPSKLPMSKSFDTFEDD 593
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,416
Number of Sequences: 5004
Number of extensions: 45346
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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