Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10o01
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 153 9e-38
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 77 1e-14
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 30 2.0
06_01_0228 - 1736373-1736721,1739915-1740120,1740513-1740844,174... 29 3.5
11_06_0690 + 26303733-26306540 29 4.6
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 4.6
03_05_0167 - 21448714-21448846,21449748-21449870,21450024-214503... 28 8.0
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 153 bits (372), Expect = 9e-38
Identities = 75/157 (47%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Frame = +1
Query: 205 KKPSKQEEEISPNEYYKLRSGAVAALK-NGLKEDHPYPHKFNVSISLEEFIEKYQNLNNG 381
K+ + +EE+ P +YY+ R A+ +LK G+ +PYPHKF +I++ ++IEKY+++N G
Sbjct: 68 KESAADDEEMDPTQYYENRLKALDSLKATGV---NPYPHKFLANITVADYIEKYKSMNVG 124
Query: 382 DVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETED-KFFKDTDKLR 558
D L +VT +AGR+ + R +KL+FYDL G K+QV A+A+ E ED +F K L+
Sbjct: 125 DKLVDVTECLAGRIMTKRAQSSKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFHSTLK 184
Query: 559 RGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLP 669
RGDI+G G+PGK+K+GELSI PK I +L+PCLHM+P
Sbjct: 185 RGDIVGVCGYPGKSKRGELSIFPKKIVVLSPCLHMMP 221
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 77.4 bits (182), Expect = 1e-14
Identities = 47/127 (37%), Positives = 74/127 (58%)
Frame = +1
Query: 307 PYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAK 486
PY +K++ + + +E + Y +L NG+V +V +S+AGR+ + R G KL+F +R +
Sbjct: 122 PYAYKWDRTHTTKELQDGYTHLENGEVCADVAVSIAGRIVARRAFG-KLVFMTVRDDSGT 180
Query: 487 IQVMANAKLYETEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHML 666
IQ+ K TE++F + + GDIIG G KT+KGELS+ KN ++L L L
Sbjct: 181 IQLYCE-KDSLTEEQFEQLKTIIDIGDIIGANGSIKKTEKGELSVYVKNFEILTKSLLPL 239
Query: 667 PHLHFGL 687
P + GL
Sbjct: 240 PDKYHGL 246
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 34 SCIFISILRLSELSPIAMAESSTEKISKNXXXXXXXXXXXXXXXXXXXSQQPV 192
SC+F ++ SEL+P+ +E S K KN SQ+PV
Sbjct: 317 SCVFFTVNENSELAPVNSSEGSKSKHYKNSKVSTDPACVVIPHRTFALSQEPV 369
>06_01_0228 -
1736373-1736721,1739915-1740120,1740513-1740844,
1740935-1741499
Length = 483
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 666 QHMKAWCKQFYIFRDNRKFSFLSFTWMAHTTN 571
+H + W + F +F NR +FL +M HT N
Sbjct: 352 RHHRTWDRLFRLFTRNRMRTFLIEAFMCHTHN 383
>11_06_0690 + 26303733-26306540
Length = 935
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +1
Query: 217 KQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLEN 396
+Q +++ P Y RS +AA KNG K H V + FIE + GDVL
Sbjct: 847 RQRQQVVP--YSPRRSNRLAA-KNGGKHIHSSTKAQRVVMKKLGFIEDENKADEGDVLRY 903
Query: 397 VTL 405
V L
Sbjct: 904 VEL 906
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.7 bits (61), Expect = 4.6
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +1
Query: 382 DVLENVTLSVAGRVHSIRES--GAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDKL 555
D LE+ + V VH S ++ DLR E I AKL E + K+ DK+
Sbjct: 3036 DYLESDCMIVPSDVHYELSSPRNVEVEAVDLRDETFYIGETKAAKLEEKNETNTKEDDKM 3095
Query: 556 RRGDIIGCVGHPGKTKKGELSIIPKNIKL 642
++ V + KT EL KN+ L
Sbjct: 3096 VLVEVESPVKNEDKTDLVELESFVKNVSL 3124
>03_05_0167 -
21448714-21448846,21449748-21449870,21450024-21450302,
21450389-21450672,21450737-21450964,21452937-21453110,
21453198-21453732,21453779-21453840,21453908-21454231,
21454664-21455093,21457033-21457268,21457355-21457414,
21457495-21457628,21457884-21458010,21458239-21458337,
21458414-21458513,21458601-21458671,21459101-21459172,
21459656-21459787,21460512-21460670
Length = 1253
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 223 EEEISPNEYYKLRSGAVAALKNGLKEDH 306
EE+++P + R G+V K LK DH
Sbjct: 5 EEQVAPEQVISTRGGSVLGKKTILKSDH 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,424,442
Number of Sequences: 37544
Number of extensions: 264645
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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