Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10o01
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   1e-30
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   2.7  
SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)        29   3.5  
SB_14134| Best HMM Match : Hormone_3 (HMM E-Value=2.3)                 29   3.5  
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score =  130 bits (313), Expect = 1e-30
 Identities = 62/100 (62%), Positives = 77/100 (77%)
 Frame = +1

Query: 388 LENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDKLRRGD 567
           L + +L    R+H+ R SG+KL+FYDLR EG+K+QVMA+A+   +E  F    DK+RRGD
Sbjct: 594 LTSCSLQDQRRIHAKRASGSKLLFYDLRGEGSKLQVMADARA--SEQDFNAVHDKIRRGD 651

Query: 568 IIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGL 687
           IIG  G PGKTKKGELSI+P ++ LLAPCLHMLPHLHFGL
Sbjct: 652 IIGVKGKPGKTKKGELSILPSSVTLLAPCLHMLPHLHFGL 691



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 37/74 (50%), Positives = 50/74 (67%)
 Frame = +1

Query: 178 SQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIE 357
           ++ P    EKK    EE + PN+Y+K+RS AV ALK    ++ PYPHKF+VSISL +FI+
Sbjct: 52  AKNPGQGEEKKKEIDEESLDPNQYFKIRSLAVEALKK--TDEPPYPHKFHVSISLNDFIQ 109

Query: 358 KYQNLNNGDVLENV 399
           KYQ+  NG   E+V
Sbjct: 110 KYQDTENGTWSEDV 123


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 28/92 (30%), Positives = 42/92 (45%)
 Frame = +1

Query: 226  EEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTL 405
            EEIS N    +    V  + NG KED   P K + + S +      + L NGD++++   
Sbjct: 1360 EEISENGNDLISVTKVEKV-NGFKEDCNGPEKIDTNQSDDTTPVDTKPLTNGDIVDDTGP 1418

Query: 406  SVAGRVHSIRESGAKLIFYDLRAEGAKIQVMA 501
             +A   HS + +    I   L+ E   IQV A
Sbjct: 1419 ELARMDHS-KPTNFPAIPSHLKLELTSIQVPA 1449


>SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)
          Length = 613

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 283 KNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVA 414
           +NG++ ++    K  +++S +E+IEK Q   NG +   V+L  A
Sbjct: 349 ENGIENENK---KRKINLSYQEWIEKVQKKRNGGITRKVSLKQA 389


>SB_14134| Best HMM Match : Hormone_3 (HMM E-Value=2.3)
          Length = 683

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 187 PVVAAEKKPSKQEEEISPNEYYKLRSGAVAAL 282
           P++ A+ +P K  E+++ +EYY L  G V  L
Sbjct: 33  PLIPAKARPQKGTEKLNGDEYYSLFVGGVHRL 64


>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 568 IIGCV--GHPGKTKKGELSIIPKNIKLLAP 651
           I+GCV  G PGKT+    S IP  +KL  P
Sbjct: 24  IVGCVKMGVPGKTEGTMFSQIPCEVKLTGP 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,768,938
Number of Sequences: 59808
Number of extensions: 300246
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)