Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10o01
         (687 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089547-1|AAL90285.1|  574|Drosophila melanogaster LD23509p pro...   241   5e-64
AE014298-1351|AAF46510.2|  607|Drosophila melanogaster CG12141-P...   241   5e-64
AE014298-1350|AAN09255.1|  574|Drosophila melanogaster CG12141-P...   241   5e-64

>AY089547-1|AAL90285.1|  574|Drosophila melanogaster LD23509p
           protein.
          Length = 574

 Score =  241 bits (591), Expect = 5e-64
 Identities = 120/166 (72%), Positives = 135/166 (81%), Gaps = 2/166 (1%)
 Frame = +1

Query: 196 AAEKKPSK-QEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQN- 369
           A +KK S  +EEEISPNEY+KLRS AV  LK     D PYPHKF+VS SLE+FI KY+N 
Sbjct: 39  AGKKKSSAAEEEEISPNEYFKLRSAAVQELKRSPATD-PYPHKFHVSSSLEDFIAKYENS 97

Query: 370 LNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTD 549
           L  G+ LENV LSVAGRVH+IRESGAKLIFYDLR EG K+QVMA+AK Y++E  F  DT 
Sbjct: 98  LKEGETLENVKLSVAGRVHAIRESGAKLIFYDLRGEGVKVQVMASAKSYKSEADFEIDTS 157

Query: 550 KLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGL 687
           KLRRGDIIG VGHPGKTKKGELS++P  IKLL+PCLHMLPHLHFGL
Sbjct: 158 KLRRGDIIGVVGHPGKTKKGELSVMPSEIKLLSPCLHMLPHLHFGL 203


>AE014298-1351|AAF46510.2|  607|Drosophila melanogaster CG12141-PB,
           isoform B protein.
          Length = 607

 Score =  241 bits (591), Expect = 5e-64
 Identities = 120/166 (72%), Positives = 135/166 (81%), Gaps = 2/166 (1%)
 Frame = +1

Query: 196 AAEKKPSK-QEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQN- 369
           A +KK S  +EEEISPNEY+KLRS AV  LK     D PYPHKF+VS SLE+FI KY+N 
Sbjct: 72  AGKKKSSAAEEEEISPNEYFKLRSAAVQELKRSPATD-PYPHKFHVSSSLEDFIAKYENS 130

Query: 370 LNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTD 549
           L  G+ LENV LSVAGRVH+IRESGAKLIFYDLR EG K+QVMA+AK Y++E  F  DT 
Sbjct: 131 LKEGETLENVKLSVAGRVHAIRESGAKLIFYDLRGEGVKVQVMASAKSYKSEADFEIDTS 190

Query: 550 KLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGL 687
           KLRRGDIIG VGHPGKTKKGELS++P  IKLL+PCLHMLPHLHFGL
Sbjct: 191 KLRRGDIIGVVGHPGKTKKGELSVMPSEIKLLSPCLHMLPHLHFGL 236


>AE014298-1350|AAN09255.1|  574|Drosophila melanogaster CG12141-PA,
           isoform A protein.
          Length = 574

 Score =  241 bits (591), Expect = 5e-64
 Identities = 120/166 (72%), Positives = 135/166 (81%), Gaps = 2/166 (1%)
 Frame = +1

Query: 196 AAEKKPSK-QEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQN- 369
           A +KK S  +EEEISPNEY+KLRS AV  LK     D PYPHKF+VS SLE+FI KY+N 
Sbjct: 39  AGKKKSSAAEEEEISPNEYFKLRSAAVQELKRSPATD-PYPHKFHVSSSLEDFIAKYENS 97

Query: 370 LNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTD 549
           L  G+ LENV LSVAGRVH+IRESGAKLIFYDLR EG K+QVMA+AK Y++E  F  DT 
Sbjct: 98  LKEGETLENVKLSVAGRVHAIRESGAKLIFYDLRGEGVKVQVMASAKSYKSEADFEIDTS 157

Query: 550 KLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGL 687
           KLRRGDIIG VGHPGKTKKGELS++P  IKLL+PCLHMLPHLHFGL
Sbjct: 158 KLRRGDIIGVVGHPGKTKKGELSVMPSEIKLLSPCLHMLPHLHFGL 203


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,984,137
Number of Sequences: 53049
Number of extensions: 451499
Number of successful extensions: 978
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)