Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10o01
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna ...   166   1e-41
U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna ...   166   1e-41
U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna ...   158   3e-39
AF078781-1|AAC26915.2|  258|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    28   5.4  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform b protein.
          Length = 596

 Score =  166 bits (404), Expect = 1e-41
 Identities = 81/165 (49%), Positives = 108/165 (65%)
 Frame = +1

Query: 193 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 372
           VA   K  ++ +   P EY+ +R   + A +     D+P+PHKFNV+ISL +FI KY  L
Sbjct: 62  VADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNVTISLTDFITKYTPL 119

Query: 373 NNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDK 552
               V+E + +SVAGR+HS RESG+KL+FYD+  EG  IQ+MANAK +  +  F    D+
Sbjct: 120 EKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFVTLHDR 178

Query: 553 LRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGL 687
           ++RGDI+G  G   +TK GELS+IP  I  L PCLHMLPH HFGL
Sbjct: 179 IKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPHSHFGL 223


>U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform a protein.
          Length = 572

 Score =  166 bits (404), Expect = 1e-41
 Identities = 81/165 (49%), Positives = 108/165 (65%)
 Frame = +1

Query: 193 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 372
           VA   K  ++ +   P EY+ +R   + A +     D+P+PHKFNV+ISL +FI KY  L
Sbjct: 38  VADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNVTISLTDFITKYTPL 95

Query: 373 NNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDK 552
               V+E + +SVAGR+HS RESG+KL+FYD+  EG  IQ+MANAK +  +  F    D+
Sbjct: 96  EKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFVTLHDR 154

Query: 553 LRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGL 687
           ++RGDI+G  G   +TK GELS+IP  I  L PCLHMLPH HFGL
Sbjct: 155 IKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPHSHFGL 199


>U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform c protein.
          Length = 514

 Score =  158 bits (384), Expect = 3e-39
 Identities = 73/129 (56%), Positives = 93/129 (72%)
 Frame = +1

Query: 301 DHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEG 480
           D+P+PHKFNV+ISL +FI KY  L    V+E + +SVAGR+HS RESG+KL+FYD+  EG
Sbjct: 14  DNPFPHKFNVTISLTDFITKYTPLEKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEG 72

Query: 481 AKIQVMANAKLYETEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLH 660
             IQ+MANAK +  +  F    D+++RGDI+G  G   +TK GELS+IP  I  L PCLH
Sbjct: 73  THIQIMANAKFHTGDVDFVTLHDRIKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLH 132

Query: 661 MLPHLHFGL 687
           MLPH HFGL
Sbjct: 133 MLPHSHFGL 141


>AF078781-1|AAC26915.2|  258|Caenorhabditis elegans Hypothetical
           protein B0545.3 protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 248 YSLGLISSSCLDGFFSAATTGCCEA 174
           YS+G ++S+C +G F   +TG C A
Sbjct: 224 YSVGDVASACSEGTFGDPSTGLCVA 248


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 184 QPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHP 309
           +P++++     + +E   PN  Y LR  AV + K   K D P
Sbjct: 363 KPLISSSLAEPENKENTKPNSPYSLRKRAVDSSKKPGKSDSP 404


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 256  LRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLE 393
            +R G   ++ NGL+E+  Y H   + +S     + YQ   + DV++
Sbjct: 1632 MRGGLGISVVNGLQEELIYAHFGGIVVSARRVDKTYQMTGSVDVIQ 1677


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,373
Number of Sequences: 27780
Number of extensions: 244174
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)