Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10o01
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin...   154   5e-38
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f...    66   3e-11
At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as...    39   0.004
At5g45370.3 68418.m05573 nodulin-related / integral membrane fam...    30   1.7  
At3g52170.1 68416.m05727 expressed protein                             28   5.0  
At5g03970.1 68418.m00377 F-box family protein predicted proteins...    27   8.8  

>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
           lysine--tRNA ligase, putative similar to SP|Q43776
           Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
           {Lycopersicon esculentum}; contains Pfam profile
           PF00152: tRNA synthetases class II (D, K and N)
          Length = 626

 Score =  154 bits (374), Expect = 5e-38
 Identities = 78/164 (47%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
 Frame = +1

Query: 181 QQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEK 360
           Q P  +++K  +  +EE+   +YY+ R   +AA K   K ++PYPHKF VS+S+ ++IE 
Sbjct: 68  QAPKASSQKAVAADDEEMDATQYYENRLKYLAAEK--AKGENPYPHKFAVSMSIPKYIET 125

Query: 361 YQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANA-KLYETEDKFF 537
           Y +LNNGD +EN   S+AGR+ S R S +KL FYDL  +  K+QVMA+A K    E +F 
Sbjct: 126 YGSLNNGDHVENAEESLAGRIMSKRSSSSKLFFYDLHGDDFKVQVMADASKSGLDEAEFL 185

Query: 538 KDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLP 669
           K     +RGDI+G +G PGKTK+GELSI P++  LL+ CLHM+P
Sbjct: 186 KLHSNAKRGDIVGVIGFPGKTKRGELSIFPRSFILLSHCLHMMP 229


>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
           family protein similar to SP|Q9RHV9 Lysyl-tRNA
           synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
           stearothermophilus}; contains Pfam profile: PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 602

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
 Frame = +1

Query: 307 PYPHKFNVSISLEEFIEKYQNLNNGDVLENVT--LSVAGRVHSIRESGAKLIFYDLRAEG 480
           PY +K+  S S  +  E Y++L NG+  +N    +S+AGRV + R  G KL F  LR + 
Sbjct: 102 PYAYKWEKSHSANQLQEIYKHLANGEESDNEIDCVSIAGRVVARRAFG-KLAFLTLRDDS 160

Query: 481 AKIQVMANAKLYETEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLH 660
             IQ+    +   ++D+F +    +  GDI+G  G   +T+KGELSI   +  +L   L 
Sbjct: 161 GTIQLYCEKERL-SDDQFEQLKQFIDIGDILGASGSMKRTEKGELSICVNSFSILTKSLL 219

Query: 661 MLPHLHFGL 687
            LP  + GL
Sbjct: 220 PLPDKYHGL 228


>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative simialr to
           aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
           melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
           norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 532

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +1

Query: 403 LSVAGRVHSIRESGAKLIFYDLRAEGAKIQ-VMANAKLYETEDKFFKDTDKLRRGDIIGC 579
           +S+ GR+H  R  G KL F  LR  G  +Q V+   ++     KF K   +    ++IG 
Sbjct: 88  VSIRGRLHKNRLVGTKL-FVILRESGFTVQCVVEETRVGANMIKFVKQLSRESVVELIGV 146

Query: 580 VGHPGKTKKGELSIIPKNIKLLAPCLHMLPHL 675
           V HP K   G    +  +++ +      LP+L
Sbjct: 147 VSHPKKPLTGTTQQVEIHVRKMYCLSRSLPNL 178


>At5g45370.3 68418.m05573 nodulin-related / integral membrane family
           protein contains Pfam profile:PF00892 integral membrane
           protein DUF6
          Length = 321

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 37  CIFISILRLSELSPIAMAESSTEKIS 114
           C+F  +L LS L+P+A    STEK++
Sbjct: 52  CVFRDLLALSILAPLAFFRESTEKVN 77


>At3g52170.1 68416.m05727 expressed protein
          Length = 499

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 340 LEEFIEKYQNLNNGDV--LENVTLSVAGRVHSIRESGAKLI 456
           +E FI+K+Q LNNG    L      V G  ++IRE   ++I
Sbjct: 39  VESFIKKHQKLNNGSFPSLSLTHKEVGGSFYTIREIVREII 79


>At5g03970.1 68418.m00377 F-box family protein predicted proteins,
           Arabidopsis thaliana
          Length = 418

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 442 GAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTD 549
           G K+  YD  +E  +I V+   K Y+ +++   +TD
Sbjct: 242 GGKIAIYDSNSEEKRIDVIKLPKTYDYDEQVLGETD 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,791,469
Number of Sequences: 28952
Number of extensions: 226760
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)